Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00011 ATGGAGAGAAAGTTTTGGGCTTTAGCTTTCATCTGGTGGGTCTTGTTGGTTAATCCACTATGGCTGATTTCTGCTAACATGGAAGGTGATGCTTTACATAGCCTGAGAACGAATTTACAGGATCCTTACAATGTTTTGCAAAGTTGGGATCCTACACTTGTCAATCCATGCACATGGTTTCATGTTACATGCAACAATGATAATAGTGTCATAAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGTCAGCTCAAGAATTTGCAATATTTGGAACTTTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAACCGTTTCACTGGCCCTATCCCAGACTCATTGGGCAAGCTGTCAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCCTGATGGGTCCTATTCCCATGACACTAACTAATATTTCAGCTCTCCAAGTTCTGGATTTGTCTAATAATCGTCTCTCGGGCGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTACAAACAACTTGGATCTATGTGGTCCAGTAACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCCCCTCCTCCCCCTTTTGTCCCTCCACCCCCAATTGCTGCCCCAGGTATATATCAAATTGCAGGAGGTAATGGTGCCACTGGGGCAATAGCTGGAGGAGTTGCAGCAGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCATGGTGGCGTCGAAGAAAACCACAAGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTCCATCTTGGGCAGCTTAAGAGGTTCTCACTACGAGAACTGCAAGTTGCAACAGATAGTTTCAGCAATAAGAACATTCTTGGGCGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCATTGGTTGCTGTGAAAAGATTGAAAGAGGAACGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCATAGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACACCAACAGAAAGGCTACTCGTTTATCCCTACATGGCCAACGGAAGTGTTGCCTCGTGCTTAAGAGAGCGTCCTCCACATCAAGAACCCCTAGATTGGCCAACAAGGAAAAGAATTGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGTGACTTTGGATTGGCAAAACTCATGGATTACAAGGACACCCATGTCACAACTGCTGTACGGGGCACAATTGGGCACATAGCTCCAGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACTGACGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACTGGACAAAGAGCTTTTGACCTTGCTCGGCTTGCCAATGATGATGATGTTATGCTACTTGATTGGGTGAAAGGACTTCTGAAAGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACATAACAATTATATAGAAGCCGAGGTAGAACAGTTAATCCAGGTTGCACTTCTCTGCACACAAGGTTCCCCTATGGACCGACCTAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAATGGCAGAAAGTAGAAGTTCTCCGCCAGGAAGTGGAGCTTGCCCCTCATCCCAATTCTGATTGGATAGTTGACTCTACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTGA 1893 0.449 MERKFWALAFIWWVLLVNPLWLISANMEGDALHSLRTNLQDPYNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNRFTGPIPDSLGKLSKLRFLRLNNNSLMGPIPMTLTNISALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPIAAPGIYQIAGGNGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00011 630 SMART serkin_6 307 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4302g00011 630 Gene3D Phosphorylase Kinase; domain 1 276 383 - -
Gabi4302g00011 630 FunFam Somatic embryogenesis receptor-like kinase 1 384 601 - -
Gabi4302g00011 630 SUPERFAMILY L domain-like 29 192 - -
Gabi4302g00011 630 Gene3D Transferase(Phosphotransferase) domain 1 384 601 - -
Gabi4302g00011 630 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Gabi4302g00011 630 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Gabi4302g00011 630 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Gabi4302g00011 630 ProSiteProfiles Protein kinase domain profile. 307 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4302g00011 630 Pfam Protein kinase domain 308 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4302g00011 630 FunFam Somatic embryogenesis receptor kinase 1 276 383 - -
Gabi4302g00011 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Gabi4302g00011 630 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Gabi4302g00011 630 SUPERFAMILY Protein kinase-like (PK-like) 286 582 IPR011009 -
Gabi4302g00011 630 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00011 Gabi-Chr4302 152106 159460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00011 1 630 Receptor kinase-like Gene Family AT1G71830 87.797 0.0 1039
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi4302g00011 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00011 K13418 - gmx:100789884 1117.45