Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4302g00002 ATGGATATGAAAGTGGCAAGGAGGACTGAACGAACTGTTGGGACAACATGTGCGTATTGGCTTGCTGGAAGATGCAACAGAAACCCTTGCAGGTTTTTGCACGGAGAAACACCAGTACCCGTACCATCTGCTCCTTATTATAAAGCGAAGAATGCTTATTGTTATATGAAGCCCAATTCTTCCTACGAGAAGATCCCTCGGTATAAATCAAGGAGAGTATATGTTAGAAATAATGATGATGGAGGAGATGGGACAAATGTAACTGTGGCTTCTCAGTCCAAAAGTCCGTCACAAAGCATCTGCAGATACTGGATGAAGGACAATTGCGCACATGGTGACCAGTGCCAGAATTTACATTCATGGTTTTATGGTGATAGGCTTTCCAAAGTAGCAAACCTTCAAGAGCATGAGAAGGTTGTCACTGGGATTGCACTTCCAGTTGGATCAGATAAACTTTATTCTGGCAGCGTTGATGGGACAGTTCGGATGTGGGACTGTCATTCTGGTCGATGTGCTGATGTGATAAATCTTGGTGTTGAAATTACCTCCTTCATCAGTGAGAGCCCATGGGTTTTTGTTGGGGTGCGGAGCGCTGTAAGGGCTTGGAATATTCAGACTGCTTCTGAGTTTACTCTTAATGGTCCTAAGGGGCAAGTTCTTGCCATGATTGTTGGCAATGATACACTGTTTGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCTGAAGCTATTTCCCCTTTTGAACTGATTAAATCACCAAGTGGCCACACTAAAGCTGTGGTTTGTCTGACTGTTGGTAGAAATAAGCTGTACTCTGGGTCCATGGACCATAGCATAATGGTTTGGAACCTTGATACTTTAGAGTGTAAAATGACCCTCAATGGGCATACTGACATAGTCACATCCCTTATTTGTTGGCACAATTATTTGTTATCAAGTTCATACGACTGCACAATTAAGGTCTGGACTGCCACCGAAGAGGGAACTTTTGAAGTGACATATACGCACTCTGAGGAAAATGGTGTTCTTGCACTTAGTGGGATGACTGATGCAGAAGACAAGAATATACTGTTTTGCTCTTGCAGAGACAATTCAGTTCACCTGTATGAATTGCCATCATTTTCTGAGATGGGTCGAATATTTGCCGAGAAAGAAGTTCAATCATTAGAAATAGGTCCTGGTGGGCTTTTTTTCACTGGAGACACGGTTTGCTGA 1227 0.4328 MDMKVARRTERTVGTTCAYWLAGRCNRNPCRFLHGETPVPVPSAPYYKAKNAYCYMKPNSSYEKIPRYKSRRVYVRNNDDGGDGTNVTVASQSKSPSQSICRYWMKDNCAHGDQCQNLHSWFYGDRLSKVANLQEHEKVVTGIALPVGSDKLYSGSVDGTVRMWDCHSGRCADVINLGVEITSFISESPWVFVGVRSAVRAWNIQTASEFTLNGPKGQVLAMIVGNDTLFAGAEDGVISAWRGSSEAISPFELIKSPSGHTKAVVCLTVGRNKLYSGSMDHSIMVWNLDTLECKMTLNGHTDIVTSLICWHNYLLSSSYDCTIKVWTATEEGTFEVTYTHSEENGVLALSGMTDAEDKNILFCSCRDNSVHLYELPSFSEMGRIFAEKEVQSLEIGPGGLFFTGDTVC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4302g00002 408 SMART WD40_4 290 327 IPR001680 GO:0005515
Gabi4302g00002 408 SMART WD40_4 205 242 IPR001680 GO:0005515
Gabi4302g00002 408 SMART WD40_4 333 374 IPR001680 GO:0005515
Gabi4302g00002 408 SMART WD40_4 250 287 IPR001680 GO:0005515
Gabi4302g00002 408 SMART WD40_4 126 165 IPR001680 GO:0005515
Gabi4302g00002 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 326 IPR001680 GO:0005515
Gabi4302g00002 408 Gene3D - 4 67 - -
Gabi4302g00002 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Gabi4302g00002 408 PANTHER - 23 406 IPR044715 -
Gabi4302g00002 408 Gene3D - 106 252 IPR015943 GO:0005515
Gabi4302g00002 408 Gene3D - 253 407 IPR015943 GO:0005515
Gabi4302g00002 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Gabi4302g00002 408 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Gabi4302g00002 408 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Gabi4302g00002 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Gabi4302g00002 408 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Gabi4302g00002 408 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515
Gabi4302g00002 408 Pfam WD domain, G-beta repeat 130 165 IPR001680 GO:0005515
Gabi4302g00002 408 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Gabi4302g00002 408 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Gabi4302g00002 408 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Gabi4302g00002 408 SUPERFAMILY WD40 repeat-like 106 405 IPR036322 GO:0005515
Gabi4302g00002 408 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Gabi4302g00002 408 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Gabi4302g00002 408 SMART c3hfinal6 11 36 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4302g00002 Gabi-Chr4302 74747 84514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4302g00002 133 374 Acyl Lipid Metabolism Gene Families AT3G18860 25.095 7.54e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4302g00002 WD40 0.00065 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4302g00002 - - gmx:100787799 578.556