LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4302g00001	ATGACGGTTGAAGATGCTAAGCGTTACGGGAACAGGAAAAGAAAGCTTCTTGTCAATGAGAGAGTCGAGAATCAGTCTCCAATGGCGGTTGAAGATGTTAAGTGTTCCGGAAAGAGGAAAAGAAAGCTTCTTGTCAATGAGAGAGTCGAGAATCAGTCTCCAATGGCGGTTGAAGATGTTAAGTGTTCCGGAAAGAGGAAAAGAAAGCTTCTTGTCAATGAGAGAGTCGAGAATCAGTCTCCAATGGCGGTTGAAGATGTTAAGTGTTCCGGAAAGAGGAAAAAAAAGCTTCTTGTCAATGAGAGAGTCGAGTCTCCAATGGCGGTTGAAGATGTTAAGTGTTCCGGAAAAGGGAAAAGAAAGCTTCTTGTCAATGAGAGAGTCGAGATTAGGAGTATAGAAGATGGTTTTTTGGGCTCATGGCACCAAGGCATAGTTATCGACTGGGCGAAGCAGAAGCGTCGTGTCAAATATGACAACATTTTTGAAGAAGGTGGATCAAATCATCTTGTGGATGTGGTAGAGGTTTCACCCGTTTTGGATGGTGGTAGTTCTTCTTCTTTTTCTTCTGCAGATGGTTGCAATGAACGTGGGCTCATTAGACCCCTGCCTCCTCTGATTGAATTCGGGGTATGGGACCTTCCATTTGGTCTATGTGTTGATGCATTATACGAGGAAGCTCAGTGGGAAGGTGTTATATTTGATCACTGCAATGGAATGGAGGAAAGGAGCATATTCTTCCCAGATTTGGGTGATGAACTGAAGATTGGAATTCATCAATTGAGGATCACTCAAGTTTGGAATGAAGCTACTGGGAATTGGGAGCCACGAGGGAAGTGGATGCTTCTTGAAGTGATTGAGGAGTGTGAGCAGTTTTCCTATATTGGAGTTTCATTTAAGCAAATTTGGTTTGATTTAAGGAATCATAAGGAATTTGATAAAATAAGGGACTGGACTTGTAATGTGAAAGACTTGTGGAGAGACCTTGTAAGGGAGATAGTTGGTGATTACTTTGCTTTCTTGAAAGAAACACCAGAGCTGGAGTCAGTTGAACATACTGATATTGTTCATTGTGATGCTAGTCCTAGTAATGTACTTGGTTCTAAAATTGGAATATCTGATTGCCCTGTGGAAAGTGGTGACTCTACGAACTTGATAGATACCGATCAAAACGGTGGTAGCATCATTTTCCTTCAAGAGAAATATGATACAAATCCTTTGGTGGATGGTGCATCAGAAAAAGAAATTGTGTTGGTAGAAGAACCTGAGTCTCAAAATGAAAGAAGTGAAAAACGTAGACGCTCTACGTCCATATATTGGCAACCTCTGGTGCTATCTGAAGTTGAATTTTGTCCTAATGTTATTAATCAATATGGAGCTGGATGTGAGAGCAAGATGACCAGGGAAGGTTTGAAGACAAAAGTAAGAAAACATCTAGCGTATCTTGGATGGAAAATTGAGTGGACTATACACAAAAATTGTCCTAGGCAAAGACGATACAGGTACAAGTCACCAAATACACAGGATAAGAAGGTTTACTATTCAATTCCTCAAGTTTGTAGTCATTTGAAAAAGGAGTCCAACATGAATTCTGTGTTGTCCCAAAAACACCAGAGCAGGATGCTGTCCCAAAATGTTCATCATCCGATTGGGGCATCCTATCCTGTCGAAAATGTAGCTGAATCACATACTCCAGGTGGTTTACCAATTGGGAATACAAATCATAAACGCAACACGAAATCAAAGGCCTGCCCACCAAAGCACAAGAGGAATGGATTACCTACAAGGGTGCAGAATGTAAATTCCCCTTGTTTGTCTCATCAAAATGTTTTGTCTTGGTTAATAGAAAGCAACATGGTATTGCCAACATCTAAGGTCTACTATCGGGGAAAAGGAGGCAAGAACACTCACGACATTGAAGGGAGGGTAACTCTTGATGGAATCAAGTGTGGCTGTTGTCAGAATGTATATACACCTGGTGCCTTTGCATTTCATGCTAGTGGCTGTTATGACTGCAGGCCTTGTGCTAATATCTTTTTGAGGGATGGTAGGTCACTCTTGGATTGCATGATACAACTAATGCATAAAAATTGGGCAGAGGAAGCTTTGGAAAAACAATGCAATGATCTGTGTCAAGGTGAAAGTGACAATTGTTCTGTTTGTCATGATGGTGGTGAACTTATTTTATGTGACAAATGCCCGCCTTCATTTTATATGGAGTGTCTTGGTTTAGAGGATATCCCTGATGGTGACTGGTTTTGTCTATCATGTCGTTGCCGGATTTGCAACGAAATCAAAATCCAAGGGACTGAAGATGGAGATTTTCTTACTTGCATTCAATGTGAACATAAGTATCACATTGGATGCCTGAGAAAAAGACCAGGAGATAAATCAAGAATATATTTGAAAAATTGGTTATGTGGAGAAGAGTGTGAACAGATATATGCAGGCATTCATCAACTATTAGGAAAACCAATTTTAGTGGGTGCCGACAACCTAACTTGGACATTAGTGAAGTGTGTCAACTCTGAGAGTTGTGATGTTGGTGGTACTAAAATTGACTTGTTGGCAGAGAGTTACAGCAAACTCAATGGTGCACTTTCAGTGATGCATGAATGTTTTGAGCCCTTAAAGAACCCTTACTCTAACAGAGATCTCATGGATGACGTTATATTCGGTAGAAGGTCGGAGCTTAATAGATCAAATTTCCAGGGTTTCTATGTTGTAATTATGGAGAGAAATGAAGAATTGGTTAGTGTGGCAACTGTTAGGATATTTGGACGAAAGGTAGCAGAAGTACCTCTCGTAGCTACCAGATTTATGTATCGTGGACTTGGAATGTGTCGTATTTTAATGGATGAGCTTGAAAAGAAACTCATGCGACTAGGAGTGGAGAGGATAGTTTTGCCTGCTGTTCCTAATATGCTTGAAACATGGACCAAATCTTTTAATTTCGTGAAGATGACAAGTTTTGAAAGATCACAGTTTTTGGATTACGCTTTCCTAGATTTTCCAGGAACTGTTATGTGTCAGAAGCTGTTGACAACTCTTCCATCCCAGATTTGACTTTAACAAGAGCTTTGTAAGTTTGTTTTTGCAAAGGATATAAAGCCATCAAGATCTACGCGGTTATTTCTCTGTCAGTGTAGAATTGGTTTTGATAAGTCCAGTCCCCAATATAAAGTTGACCAAGAAGAAGAGATTCACAAGAGTGGAATGATGGAAATGCAAGTGGAGGAGTACGTCTAA	3249	0.4032	MTVEDAKRYGNRKRKLLVNERVENQSPMAVEDVKCSGKRKRKLLVNERVENQSPMAVEDVKCSGKRKRKLLVNERVENQSPMAVEDVKCSGKRKKKLLVNERVESPMAVEDVKCSGKGKRKLLVNERVEIRSIEDGFLGSWHQGIVIDWAKQKRRVKYDNIFEEGGSNHLVDVVEVSPVLDGGSSSSFSSADGCNERGLIRPLPPLIEFGVWDLPFGLCVDALYEEAQWEGVIFDHCNGMEERSIFFPDLGDELKIGIHQLRITQVWNEATGNWEPRGKWMLLEVIEECEQFSYIGVSFKQIWFDLRNHKEFDKIRDWTCNVKDLWRDLVREIVGDYFAFLKETPELESVEHTDIVHCDASPSNVLGSKIGISDCPVESGDSTNLIDTDQNGGSIIFLQEKYDTNPLVDGASEKEIVLVEEPESQNERSEKRRRSTSIYWQPLVLSEVEFCPNVINQYGAGCESKMTREGLKTKVRKHLAYLGWKIEWTIHKNCPRQRRYRYKSPNTQDKKVYYSIPQVCSHLKKESNMNSVLSQKHQSRMLSQNVHHPIGASYPVENVAESHTPGGLPIGNTNHKRNTKSKACPPKHKRNGLPTRVQNVNSPCLSHQNVLSWLIESNMVLPTSKVYYRGKGGKNTHDIEGRVTLDGIKCGCCQNVYTPGAFAFHASGCYDCRPCANIFLRDGRSLLDCMIQLMHKNWAEEALEKQCNDLCQGESDNCSVCHDGGELILCDKCPPSFYMECLGLEDIPDGDWFCLSCRCRICNEIKIQGTEDGDFLTCIQCEHKYHIGCLRKRPGDKSRIYLKNWLCGEECEQIYAGIHQLLGKPILVGADNLTWTLVKCVNSESCDVGGTKIDLLAESYSKLNGALSVMHECFEPLKNPYSNRDLMDDVIFGRRSELNRSNFQGFYVVIMERNEELVSVATVRIFGRKVAEVPLVATRFMYRGLGMCRILMDELEKKLMRLGVERIVLPAVPNMLETWTKSFNFVKMTSFERSQFLDYAFLDFPGTVMCQKLLTTLPSQIXLXQELCKFVFAKDIKPSRSTRLFLCQCRIGFDKSSPQYKVDQEEEIHKSGMMEMQVEEYV	1082

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4302g00001	1082	SUPERFAMILY	Acyl-CoA N-acyltransferases (Nat)	904	978	IPR016181	-
	Gabi4302g00001	1082	Gene3D	-	852	1018	-	-
	Gabi4302g00001	1082	Pfam	Acetyltransferase (GNAT) family	896	984	IPR000182	GO:0016747
	Gabi4302g00001	1082	SMART	PHD_3	759	811	IPR001965	-
	Gabi4302g00001	1082	SMART	PHD_3	717	758	IPR001965	-
	Gabi4302g00001	1082	SUPERFAMILY	FYVE/PHD zinc finger	713	762	IPR011011	-
	Gabi4302g00001	1082	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	758	814	IPR013083	-
	Gabi4302g00001	1082	CDD	NAT_SF	908	969	-	-
	Gabi4302g00001	1082	Pfam	Agenet domain	126	205	IPR008395	-
	Gabi4302g00001	1082	PANTHER	PHD FINGER PROTEIN 12	451	1025	IPR042163	GO:0003714\|GO:0045892
	Gabi4302g00001	1082	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	709	757	IPR013083	-
	Gabi4302g00001	1082	ProSiteProfiles	Gcn5-related N-acetyltransferase (GNAT) domain profile.	853	1014	IPR000182	GO:0016747
	Gabi4302g00001	1082	MobiDBLite	consensus disorder prediction	561	599	-	-
	Gabi4302g00001	1082	ProSiteProfiles	Zinc finger PHD-type profile.	715	760	IPR019787	-
	Gabi4302g00001	1082	SMART	agenet_At_2	212	269	IPR014002	-
	Gabi4302g00001	1082	SMART	agenet_At_2	120	182	IPR014002	-
	Gabi4302g00001	1082	CDD	Tudor_Agenet_AtDUF_rpt1_3	124	177	-	-
	Gabi4302g00001	1082	Pfam	Tify domain binding domain	641	693	IPR032308	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4302g00001	Gabi-Chr4302	26890	35197	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4302g00001	596	957	PHD Transcription Factor Family	AT5G58610	47.185	3.28e-98	331

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4302g00001	-		-	vra:106763506	1087.79