Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi429g00017 ATGAAGGAAAAGGTGGATTCTCCTATTACTGTCCTTGAGGACTATTTCAGGAGCTCAGATTCAGAAACAAGTTCATCAAAAGAGCCTACAGTGGATTCTGAGTCTCAAGACATTTCAAAACCTGCTTCTATATGGCATGCGTTTCTTCAATTGTTGAGGACCAAACCAAAGAACCCTGTACCCACATTGCATCCTCTCAGTTCCTTCAATCTCTCGAGAAGAATGAGCAGAAGCATGAGAGAAACTATACTCCCAAGTTGTCTCTCAGATGCAACTTCATCCCCCTGCTGGTCACCGTGGAAGATCTTTACTCATCATGATATACAAGTTGCAACCAATTATTTTAACCAAGAAAATTTGATCGGAAAGGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTAGCAATTAAACGGTTAACAAGAGGAACAGCTGATGAAATCATAGGGGACTTCTTATCAGAACTTGGTGTAATGGCGCATGTAAACCATCCCAATACTGCTAAGTTGGTTGGTTATGGTGTGGACGGTGGAATGCATCTTGTTCTTGAATTGTCTGAAAAAGGAAGCCTAGCTTCTGTGCTTTATGGTTCCAAGGAGAAACTACCTTGGTGTATTAGGCAAAAAATTGCATTAGGAACAGCAAAGGGTATATTATATCTTCATGAGGGTTGTCAAAGAAGAATTATCCATAGAGATATAAAAGCTGCAAATATCTTGCTCACGGAGAATTTCGAGCCTCAGATATGTGATTTCGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCACCACACCGTTTCAAAATTCGAAGGAACTTTTGGTTACCTTGCTCCTGAATACTTGCTTCATGGCATAGTAGACGAGAAAACGGACGTATTTGCCTTTGGTGTACTACTATTAGAATTAGTCAGTGGGCGGCGAGCACTTGACTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCATTGCTGAAAAAGAATGATATTATGGAGCTGATTGATCCTTCACTAGCAGATGACTATGACTCTAGGCAGATTAATCTTATGCTTTTGGCAGCTTCTTTATGCATACAACAATCCTCAATTCGTCGCCCCTCCATGAGACAGGTTCTTCAGCTTCTGAATGGCAACCTTACTTGCTTCAAGGGCATGAAGAAAACTAGAATGCCATTCTTTCGAAAAGTCTTCCAGGAAGAACTCCTTCATTCTGATTAG 1233 0.412 MKEKVDSPITVLEDYFRSSDSETSSSKEPTVDSESQDISKPASIWHAFLQLLRTKPKNPVPTLHPLSSFNLSRRMSRSMRETILPSCLSDATSSPCWSPWKIFTHHDIQVATNYFNQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMHLVLELSEKGSLASVLYGSKEKLPWCIRQKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTENFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLADDYDSRQINLMLLAASLCIQQSSIRRPSMRQVLQLLNGNLTCFKGMKKTRMPFFRKVFQEELLHSD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi429g00017 410 MobiDBLite consensus disorder prediction 14 38 - -
Gabi429g00017 410 MobiDBLite consensus disorder prediction 1 38 - -
Gabi429g00017 410 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Gabi429g00017 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Gabi429g00017 410 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi429g00017 410 SUPERFAMILY Protein kinase-like (PK-like) 90 380 IPR011009 -
Gabi429g00017 410 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
Gabi429g00017 410 Gene3D Phosphorylase Kinase; domain 1 89 189 - -
Gabi429g00017 410 Gene3D Transferase(Phosphotransferase) domain 1 192 394 - -
Gabi429g00017 410 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 394 - -
Gabi429g00017 410 Pfam Protein kinase domain 116 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi429g00017 410 PANTHER OS08G0249100 PROTEIN 6 406 IPR046958 -
Gabi429g00017 410 ProSiteProfiles Protein kinase domain profile. 115 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi429g00017 Gabi-Chr429 158353 161413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi429g00017 103 382 Receptor kinase-like Gene Family AT1G53420 40.972 1.96e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi429g00017 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi429g00017 - - gmx:100780587 732.635