Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4299g00008 ATGGCGAGGGAACTCGAGAACAAAGCGAAAGAAGCATTCTTTGACGACGACTTCGCTGTTGCCGTTGATCTCTACTCTCAAGCCATCCACTTGGATCCCAACAACGCCGATCTCTTCGCCGATAGGGCCCAAGCCCATATCAAGCTCAACGCTTTCACTGAAGCGGTTTCTGATGCAAACAAAGCTATTCAATTGAACCCGTCATTGTCAAAGGCCTATCTTCGTAAAGGGACCGCTTGTATTAAGCTTGAAGAATATCACACTGCCAAGGTAGCACTACAAAATGGTGCCTCTCTTGCACAAGATGATTCAAGGTTCACCAAGTTGATTCAAGAATGTGATCGCTATATTGCAGAGGAATCAAATGGTCTTAATAGCACCTTATCATCACGTGAGCCACCAACATCTGTACAGTCCGGTGACGGTTCCCAATTGAGTAATACAAGTAATGGGGCAACTAGCAAAGCTGAAAGAGACAGTTCTGTATCCGAAATCAATGAAATTGCACCAGTAACACCAAAATACAGACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATCTTTGCTAAAGGAATACCGGCAAAGAATGTGGTCGTTGACTTTGGTGAACAAATACTGAGTGTTACTATTGATGTTCCTGGCCAAGATGCCTATAATTTTCAACCTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAGAGTTGTGGTCTTGTCAACCAAAGTTGAAATCCATCTTGCAAAAGCTGAAGCTATTAGTTGGACATCTCTGGAATATAACAAGGATACGCTTCCCCAAAAAATAAATATGCCAATAATTCAATCTGAAAGGCCTGCATATCCATCATCAAAGCCAAGGACAAGAGATTGGGATAAGTTGGAAGCTCTAGTGAAAAAAGAGGAGAAAGAAGAAAAACTAGATGGTGATGCTGCTTTGAATAAACTATTTCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTTTTGGAGTCAAATGGAACAGTGCTGTCAACTGATTGGAAAGAAGTAGGATCAAAGAAGGTAGAAGGCAGTCCACCAGAAGGTATGGAGTTGAAGAAATGGGAGTATTGA 1122 0.4171 MARELENKAKEAFFDDDFAVAVDLYSQAIHLDPNNADLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACIKLEEYHTAKVALQNGASLAQDDSRFTKLIQECDRYIAEESNGLNSTLSSREPPTSVQSGDGSQLSNTSNGATSKAERDSSVSEINEIAPVTPKYRHEYYQKPEEVVVTIFAKGIPAKNVVVDFGEQILSVTIDVPGQDAYNFQPRLFGKIIPDKCRVVVLSTKVEIHLAKAEAISWTSLEYNKDTLPQKINMPIIQSERPAYPSSKPRTRDWDKLEALVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4299g00008 373 Gene3D Tetratricopeptide repeat domain 1 131 IPR011990 GO:0005515
Gabi4299g00008 373 MobiDBLite consensus disorder prediction 353 373 - -
Gabi4299g00008 373 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gabi4299g00008 373 SUPERFAMILY HSP20-like chaperones 169 268 IPR008978 -
Gabi4299g00008 373 Pfam Tetratricopeptide repeat 17 56 - -
Gabi4299g00008 373 Pfam CS domain 176 251 IPR007052 -
Gabi4299g00008 373 Gene3D - 173 264 IPR008978 -
Gabi4299g00008 373 FunFam Protein SGT1 homolog A 170 273 - -
Gabi4299g00008 373 Pfam SGS domain 291 371 IPR007699 -
Gabi4299g00008 373 PANTHER PROTEIN SGT1 HOMOLOG 1 371 IPR044563 GO:0051087
Gabi4299g00008 373 ProSiteProfiles CS domain profile. 172 261 IPR007052 -
Gabi4299g00008 373 ProSiteProfiles SGS domain profile. 282 373 IPR007699 -
Gabi4299g00008 373 SMART tpr_5 2 35 IPR019734 GO:0005515
Gabi4299g00008 373 SMART tpr_5 36 69 IPR019734 GO:0005515
Gabi4299g00008 373 SMART tpr_5 70 103 IPR019734 GO:0005515
Gabi4299g00008 373 MobiDBLite consensus disorder prediction 123 163 - -
Gabi4299g00008 373 FunFam Protein SGT1 homolog 1 128 - -
Gabi4299g00008 373 CDD p23_CS_SGT1_like 178 261 - -
Gabi4299g00008 373 MobiDBLite consensus disorder prediction 123 159 - -
Gabi4299g00008 373 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Gabi4299g00008 373 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4299g00008 Gabi-Chr4299 56664 61071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4299g00008 1 112 U-box Gene Family AT3G07370 29.464 2.99e-09 55.8