Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4294g00002 ATGGATGTTGAAGCAGTAGATGAAGGGGAAAACATTGATAGACCTGCTTCTGAAAATGTTGAAACTGAAAAAGGCCAGGGACATGTTATGACTGTAAACTTGGCTGAAAGAGAAGTAAATAATCAGTATGGTGATGCATATAGGAAACCACAAGTGGGCATGCTGTTTGAATCTGAAGACGCTGCAAAATCAATTTATGAGGCATATGCAAGACATGTAGGATTTAGCACCCATGTTGGTCAATTCAGTCGTGCTAAGCCTGATGGTCCAATTATAACTTGGGATTTTGCTTGTTCTTGGGAGGTATTTAAAAGGAAGAACGTAGTAAGTTGCAATGCAATGCTTAGGATTGAGAGAAAAGATGCAAACTGGGTAGTGACAAAATTTGTTGAGGATCATAACCATTCCCTTGCTTCCCCTAGAAAGGTGCAGTATCTTCGACCCCGTAGGCATTTTGCAGGTGCTACAAGAAATGTTGCAGAGACATTTGATGCCAGTAATGATTCTTATGTTCCCTTGAATGGCAATCATTTAGAAGCAGTTAGTATAGTTCGGAGTTCCTCTCCAGCAGAAAAAAGTCATCCAACAAGAAACATTGATTCTTTTACCAATGTAAGATCTTCCCGAAAGAGGACCCTTGGAAGAGATGCTCAAAATCTTCTAAATTATTTTAAGCAAATGCAGGCAGAAAACCCTGGCTTCTATTATGCAATACAGCTTGATGATGAGAACCGCATGACCAACGTATTCTGGGCTGATGCAAGGTCAAGATCAGCTTATAATTACTTTGGTGATGCGGTAATTTTTGACACAATGTATAGACCAAATCAATACCAAGTCCCATTTGCTCCATTTACAGGAGTCAATCATCATGGTCAGATGGTTTTATTTGGTTGTGCATTACTTGTAGACGAATCTGAGTCTTCCTTTACTTGGCTGTTCAGGACGTGGCTAACTGCTATGAATGATCGACCACCTGTTTCTATAACCACTGACCAAGATAGAGCCATACAAGCAGCTGTTGCCCAGGTGTTTCCAGAAACTCGCCACTGTATTTGTAAGTGGCACATTTTGAGAGAAGGTCAAGAAAGATTGGCTCATATTTACCTTGCTCATCCTTCATTCTATGGGGAGCTATATAGCTGCATCAATTTCTCTGAGACTATTGAGGATTTTGAATCAGCATGGAAGTCTCTCCTAGATAAATATGATCTCCAGAAAAATGATTGGCTTCAAGCAGTGTATAATGCTCGCAAACAATGGGCCCCTGTTTACTTTCGTGGTACTTTCTTTGCTGCATTTACTTCAAACCATGGGGTTAGCTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTTTTCTTTAAGCAGTATGAAAGATCTCTTGAACATTCACTGGAAAAAGAAATAGAAGCAGATTATGATACCATTTGTACCACACCTGTGTTGAAGACTCCATCACCAATGGAGCAACAGGCTGCAAATCTGTATACTAAGAAGATTTTTGCAAAGTTTCAGGAGGAACTGGTGGAAACTTTTGTGTATACAGCAAATAATGTTGATGATGATGGTGTGGTCAGTAAATACAGGGTTGCAAAATATGAACATGATCACAAGGCATACATGGTTACATTAGATATCTCTGAAATGAAGGCAAATTGCAGCTGTCAGATGTTTGAATACGCAGGCATTCTTTGTCGGCATATATTGACTGTCTTCACTGTTACAAATGTTCTTACCCTTCCATCGCACTACATTTTGAACCGATGGACAAGGAATGCGAAATCCAGTATTGGAACAGATGATAGAATATCAGATCCACTTGGCATTGAGAACCTAACCATACGCTTCAATAGTTTATGTCAAGAAGCCATTAAGCTTGCAGAAGAAGGGGCAATAGCTGTAGAAACTTATAATGCAGCAATTAATGCTTTAAGAGAGGGTTCTAAAAGGGTTGCTTTTGTGAAGAAAAATGTTGCAAAAGTCATACCTCCAACCACTCAGGGTAATGGAAGCAGTCAGGAAGACAATGGCAAGAGGAGCCCTTCATCAATTTCTGAAGTCATCCCATCATTATGGCCTTGGCCAGATTCAGTGACACATCACTTTAATCTTAATGACATTGGGCTTCCTGTTACTGATCTGAATCGTCCTATTGCAGATCGTGTTTCTATTCACCGTGATGGTGGCCCTCCAGACAACAATGTTGTCCTTACTTGTTTCAAGGCTATGACTTGGGTTATAGAAAATAAGAACTCAAGCCCACCCAGTAAAGTTGCAGTCATCAACATGAAGCTGCAAGATTATGGCAAGAGCTCTTCAGGAGAGACAGAAGTGCAATTCAGTGTGACGAGGATCACTTTGGAGCCTATGCTGAAGTCTATGGCTTACATCAGTCAGCAGCTCACTGCAGTCAATAGAGTTGCTGTCATCAATCTGAAGCTGCAGGATACAAAGACAACTACTGGGGAAACACAGGTGAAATTCCAAGTTTCTAGAGATACACTGGGTTCCATGTTGAGATCTATGGCCTACATCCGGGAGCAGCTTTAA 2562 0.4059 MDVEAVDEGENIDRPASENVETEKGQGHVMTVNLAEREVNNQYGDAYRKPQVGMLFESEDAAKSIYEAYARHVGFSTHVGQFSRAKPDGPIITWDFACSWEVFKRKNVVSCNAMLRIERKDANWVVTKFVEDHNHSLASPRKVQYLRPRRHFAGATRNVAETFDASNDSYVPLNGNHLEAVSIVRSSSPAEKSHPTRNIDSFTNVRSSRKRTLGRDAQNLLNYFKQMQAENPGFYYAIQLDDENRMTNVFWADARSRSAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLVDESESSFTWLFRTWLTAMNDRPPVSITTDQDRAIQAAVAQVFPETRHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFSETIEDFESAWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFRGTFFAAFTSNHGVSSFFDGYVNQQTTIPFFFKQYERSLEHSLEKEIEADYDTICTTPVLKTPSPMEQQAANLYTKKIFAKFQEELVETFVYTANNVDDDGVVSKYRVAKYEHDHKAYMVTLDISEMKANCSCQMFEYAGILCRHILTVFTVTNVLTLPSHYILNRWTRNAKSSIGTDDRISDPLGIENLTIRFNSLCQEAIKLAEEGAIAVETYNAAINALREGSKRVAFVKKNVAKVIPPTTQGNGSSQEDNGKRSPSSISEVIPSLWPWPDSVTHHFNLNDIGLPVTDLNRPIADRVSIHRDGGPPDNNVVLTCFKAMTWVIENKNSSPPSKVAVINMKLQDYGKSSSGETEVQFSVTRITLEPMLKSMAYISQQLTAVNRVAVINLKLQDTKTTTGETQVKFQVSRDTLGSMLRSMAYIREQL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4294g00002 853 SMART 26again6 555 582 IPR006564 GO:0008270
Gabi4294g00002 853 MobiDBLite consensus disorder prediction 1 26 - -
Gabi4294g00002 853 Pfam FAR1 DNA-binding domain 65 138 IPR004330 -
Gabi4294g00002 853 MobiDBLite consensus disorder prediction 667 688 - -
Gabi4294g00002 853 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 656 IPR031052 GO:0006355
Gabi4294g00002 853 Pfam MULE transposase domain 267 359 IPR018289 -
Gabi4294g00002 853 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Gabi4294g00002 853 Pfam SWIM zinc finger 546 578 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4294g00002 Gabi-Chr4294 34625 57410 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4294g00002 MULE 9.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4294g00002 - - gmx:100789242 1501.88