Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4288g00010 ATGGCCAAGAAGGGTTGGTTTAGTATGTTAAAGAAGCTCTTCATATGGGAAACACATTCCTCACAAGAGAAGAAGGAGAAAAGAAGGAAATGGATATTTGGGAGGCAGAAGACAAAGAGATTGCCTCCAATTAAAGCCTCATCGCCATCAAAAGAAGAAAGACTAAGGGAAGCTGAGGAAGAACACAGCAAGCATGCTTTAACAGTGGCCATTGCTTCAGCTGCTGCTGCTGAAGCTGCTATTGCAGCTGCTCAAGTTGCTGTTCAGGTTGTTAGGCTCCAATCTTCCCATCAACATAAAGAAAAACCAGAAGAATTTCAACCTGTTAAAACTAGGCATGATGCTTCTCAATCCACATACCAATTGCAGAGAAAGATTGAAGAGTCTTCAGCCATCAAAATTCAAACAGCATTTAGAGGTTACCTAGCAAGGAAAGCTTTGAAGGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGCAGAGCTGTGAGACGCCAAGCTATGAGTACTCTGAAGTGCTTGCAGTCCATTGTAAGTATCCAATCACATGTCATTGCAAGGAGACTCCAAATGGTTGAAGAAAGATGGGATTGTGGTGAAAATGAAGATTTGCAAGGTTCAAGAGACAAGATAATAAGGATCGACACAAACAGTGAGAATAGGTGGGATGATAGCATTTTATTGAAGGAAGAGGTAGATGCCTCTATCATAAGCAAGAAAGAAGCTATTCTCAAAGGAGAAAGAATAAAAGAATACTCATTCAACCATAGAAGATCAGCTGAATCAGAAAGAAACAAAATAAATGGAAGATGGAAGTACTGGATGGAGCAGTGGATAGACACCCAACTTTCTAAGAGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCACATTCTAGAACTAGAGAGGAATGTGGAAGAATGAAACTTAAGCTTAGAAATATTCAGAGACAAAATCAGGTTGAAGGGTTAGACTCTCCAAAACTTGCTTCAAGGAACTATTTTCCTCATAGGAGGCAGAGTTCACAGGGAGGAGAAGATGACAACTCATTTCCAAGCTCACCTGCAATTCCTACATACATGGCTGCAACAAAATCAACACAAGCAAAAGTAAGATCAACAATGTCCCCAAAATTAAGGACAGGAGGAAATTGGGACATAAATTCTGATAGTTACTCACCATGCAAGAAAAAGCTATCTATTGTAACTTCTATTAATAGTGAATTGCTCAATAGTGGTAGGATGGGGAAGCTAAGTAATAATCAGCAAAGATCTCCTTCCTTAAAGGGTCTTTCAAAGCCTACCAAACTCAAGCTAGACAATGAAGGTTCTCTCAGCATTAATTCAAACTACTCAGTGCCAAATTGA 1377 0.3958 MAKKGWFSMLKKLFIWETHSSQEKKEKRRKWIFGRQKTKRLPPIKASSPSKEERLREAEEEHSKHALTVAIASAAAAEAAIAAAQVAVQVVRLQSSHQHKEKPEEFQPVKTRHDASQSTYQLQRKIEESSAIKIQTAFRGYLARKALKALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSHVIARRLQMVEERWDCGENEDLQGSRDKIIRIDTNSENRWDDSILLKEEVDASIISKKEAILKGERIKEYSFNHRRSAESERNKINGRWKYWMEQWIDTQLSKSKELEDLDSVFSSHSRTREECGRMKLKLRNIQRQNQVEGLDSPKLASRNYFPHRRQSSQGGEDDNSFPSSPAIPTYMAATKSTQAKVRSTMSPKLRTGGNWDINSDSYSPCKKKLSIVTSINSELLNSGRMGKLSNNQQRSPSLKGLSKPTKLKLDNEGSLSINSNYSVPN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4288g00010 458 SMART iq_5 126 148 IPR000048 GO:0005515
Gabi4288g00010 458 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Gabi4288g00010 458 Pfam Protein of unknown function (DUF4005) 346 431 IPR025064 -
Gabi4288g00010 458 MobiDBLite consensus disorder prediction 34 61 - -
Gabi4288g00010 458 FunFam IQ-domain 11 126 177 - -
Gabi4288g00010 458 MobiDBLite consensus disorder prediction 415 433 - -
Gabi4288g00010 458 MobiDBLite consensus disorder prediction 338 390 - -
Gabi4288g00010 458 MobiDBLite consensus disorder prediction 415 458 - -
Gabi4288g00010 458 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Gabi4288g00010 458 Pfam IQ calmodulin-binding motif 129 148 IPR000048 GO:0005515
Gabi4288g00010 458 Gene3D iswi atpase 122 157 - -
Gabi4288g00010 458 MobiDBLite consensus disorder prediction 442 458 - -
Gabi4288g00010 458 MobiDBLite consensus disorder prediction 46 61 - -
Gabi4288g00010 458 PANTHER IQ-DOMAIN 5-RELATED 1 404 - -
Gabi4288g00010 458 MobiDBLite consensus disorder prediction 319 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4288g00010 Gabi-Chr4288 72639 74742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4288g00010 3 458 IQD Protein Family AT5G13460 43.191 5.41e-100 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4288g00010 - - gmx:100777067 650.203