Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4288g00003 ATGGCATCACACTTTGGTGGGGTGCTGAAAAAACTTGAGATGGGGGTTAATTATATCGACTATGTGTGGGATGAAGCAGAGAAAAAGCAGTACCAAAACCCATCCGTGAAAGAGTGGCTTGATGAACTTAAACAGTTTGCTTATGAGACAGACCAACTGTTAGATGAGATTGCTACTGATGCTACGCTGAAGAAGCTCAAGGCTAAATCTCATCCAACTACCAGCAAGGTACGAGGCTTCTTTTCAGCCTTTACTGGTAATCCATTTGAATCCAGGATCAAAAAGTTGCTAGAGAACTTTGAATTTCTTTCAGCAAAGCAAGAAGAAACGCTAAACGTGGGAAGCAATGAAGGTCACTTTCGTGGGAATCGCTCAAAAAGACCGCCCCCCACACCTTTGTTGGATCCATCTAGCAGCATATATGGTAGAGATGGGCAAAAGGAGCAAGTAATCAACTTTTTACTTTCAGACCATGTCAGTGGTGGCGATGATGGAGTTCCCGTAATTAGCATAGTGGGTATCGGTGGAATGGGTAAGACAACCCTTGCTCAGCTTGTGTACAATGACCAAAGGATGAAGGAGCAGTTTGAATCTAGTAGAGCATGGGTCCATGTTTCGGATTATTCTAATGTTGCTAGACTTACAAAAGCAATTCTTGAGTCGTTTAAGTTTTCAACAGATGCTGGAGGAGAAGACTTTATACCACTCCAAGGTGAATTGGCGAAGAGGGTAACTGGCAAGAAATATTTGCTTGTTCTAGATGATGTCTGGAATATTGATGAGGAAAGTTGGGTGGCCCTAAGTGCTGCCCTTAGCTATGGATCTCCTGGAAGTAGAATTCTTGTCACTACACGTGATAAGAAGGTAGCATCAGTCATGAATTCCACCCAACTACTTCCTTTAAAGGAATTGAAGGAAAATGATTGCTGGAGTTTATTTGTGAGACGTGCTTTTGGGAACAAGGATGTAAGTGAATGTCGAGATCTTGAATCAATTGGCAGGAAAATTGTAGAGAAGTGTGGAGGGTTGCCTTTGGCTATAAGTGTATTGGGAAAACTCTTGAGAAGAAATCTCTCCGAACCTTTTTGGAATGAGATACTGGAGACTGATATGTGGATTTTATCGGATAAAAATAACATTAATCCGGTACTGAGATTGAGTTACCATGTCCTTCCATCCAATCTGAAGCGTTGTTTTGCTTATTGTTCCTTGTTTCCCAAAGGTTACAGGTTCGTAAAGGAAGAGTTAATCAAGCTTTGGATGGCAGAAGGTTTGCTGAAATGCAACCGAACAGATGAAAGCGAAGAAAAGTTGGGTAATAAATTCTTCAATGGACTAGAGTCAATTTCATTTTTCCAACAATCAGGAGGTAGAGATGATTGTTTCGTCATGCATGATCTTGTCAATGATTTAGCAAAATCGGTGGCAGGGGAATTTTGTTTAAGAATCGAGGGTGATAAGGTGCAAGATGTCCCTGAGAAGACACGTCATATTTGGTTGTGCTATGATAAGGTGCAAGATGTCCCTGAAAAGACACGTCATATTCTCAAGTGTAAGGGGCTACGCAGTCTGATGATGACAAGAACAAGGATAGGAGGTGATGAAGGCTTCAAGATATGCAACGATGTACAACAAGCCATGTTCTCAACACTAATATATTTGCGGGTGTTATCATTCAAAGATTGTGATCTCTCGGAGCTAGCTGATGAGATAGGCAATTTGAAGCTTTTGCGCTACTTAGACCTTTCTTCCACAGACATTACAAGGTTACCTGATTCGATTTGTAGGTTGTATAATTTGCAGACACTGAAATTGTATGATTGTCCAGAGCTGGAATCGTTTCCTGAGCGAGGTTTGCCTTCCAGCCTGAGCAGCCTCGAAATAAAGAGATGCCCCAAACTGATTGCTTCGAGAGAGGAGTGGGGTTTGTCTAGACTTCATTCTCTGAAACAATTCACAGTTAGTGATGACTTTGAAAACGTGGAGTCCTTCCCGGAGGAGAATCTTCTGCCACCCAATATTAATATTCTCTGCTTGGAGAATTGTTCAAAGCTAAGAATAATTAACAAAAGGGGTCTTCTCCACCTCAAATCTCTCAGAACCTTATATATTTGGGATTGCCCTTGTGTTGAGTACTTGCCAGAGGAGGAGGGTCTACCCAACTCCCTTTCCGCTTTGTGGATTAGTGATTGTCCATTACTTGAGCAGCGCTATCAGAAGGAGGGAGGAGAGCATAGGCATAAAATTCGTCACATCCGTTGTGTGGAATTTCGCTACTGCTGA 2283 0.4201 MASHFGGVLKKLEMGVNYIDYVWDEAEKKQYQNPSVKEWLDELKQFAYETDQLLDEIATDATLKKLKAKSHPTTSKVRGFFSAFTGNPFESRIKKLLENFEFLSAKQEETLNVGSNEGHFRGNRSKRPPPTPLLDPSSSIYGRDGQKEQVINFLLSDHVSGGDDGVPVISIVGIGGMGKTTLAQLVYNDQRMKEQFESSRAWVHVSDYSNVARLTKAILESFKFSTDAGGEDFIPLQGELAKRVTGKKYLLVLDDVWNIDEESWVALSAALSYGSPGSRILVTTRDKKVASVMNSTQLLPLKELKENDCWSLFVRRAFGNKDVSECRDLESIGRKIVEKCGGLPLAISVLGKLLRRNLSEPFWNEILETDMWILSDKNNINPVLRLSYHVLPSNLKRCFAYCSLFPKGYRFVKEELIKLWMAEGLLKCNRTDESEEKLGNKFFNGLESISFFQQSGGRDDCFVMHDLVNDLAKSVAGEFCLRIEGDKVQDVPEKTRHIWLCYDKVQDVPEKTRHILKCKGLRSLMMTRTRIGGDEGFKICNDVQQAMFSTLIYLRVLSFKDCDLSELADEIGNLKLLRYLDLSSTDITRLPDSICRLYNLQTLKLYDCPELESFPERGLPSSLSSLEIKRCPKLIASREEWGLSRLHSLKQFTVSDDFENVESFPEENLLPPNINILCLENCSKLRIINKRGLLHLKSLRTLYIWDCPCVEYLPEEEGLPNSLSALWISDCPLLEQRYQKEGGEHRHKIRHIRCVEFRYC 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4288g00003 760 Gene3D Ribonuclease Inhibitor 480 749 IPR032675 -
Gabi4288g00003 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 402 IPR027417 -
Gabi4288g00003 760 Gene3D - 132 299 IPR027417 -
Gabi4288g00003 760 Gene3D - 2 96 - -
Gabi4288g00003 760 Pfam NB-ARC domain 146 368 IPR002182 GO:0043531
Gabi4288g00003 760 Pfam Rx N-terminal domain 8 71 IPR041118 -
Gabi4288g00003 760 PANTHER DISEASE RESISTANCE PROTEIN RP 53 729 IPR044974 GO:0006952
Gabi4288g00003 760 MobiDBLite consensus disorder prediction 114 141 - -
Gabi4288g00003 760 SUPERFAMILY L domain-like 463 733 - -
Gabi4288g00003 760 Gene3D - 303 387 IPR042197 -
Gabi4288g00003 760 PRINTS Disease resistance protein signature 340 354 - -
Gabi4288g00003 760 PRINTS Disease resistance protein signature 168 183 - -
Gabi4288g00003 760 PRINTS Disease resistance protein signature 243 257 - -
Gabi4288g00003 760 PRINTS Disease resistance protein signature 572 588 - -
Gabi4288g00003 760 Gene3D - 388 475 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4288g00003 Gabi-Chr4288 29326 32860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4288g00003 169 354 WRKY Transcription Factor Family AT5G45050 28.042 5.81e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4288g00003 - - mtr:11414856 638.262