Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4282g00071 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAGTACTATGCAATGCATGTGGCTCTCGATGGAGGACAAAGGGAACCCTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGATGATTATGAGGACCAAAGGGTTTCCAGGGTAAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGCTCAAACGAAAGCAGAACCATGATAATGTAGTATCTGGAGTGCTTGCACCTGATTACAACCAGGGATTCCGAAAGGCTGTAGATGAAGATACAAGCAATAGATCGAGTTCAGGATCAGCTATATCTAACTCAGAGAGTTGTGCACAATTTGGCGGCATGGATGCTAGTGATCTTACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTTCCTTCAAAAAAGAGGACATGTGTGGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTCACTAAAGATTTATGCACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAATGAAACACCAATGGTCTCTGTCGAGATTGGACATGGAAGCGTTCTCATTAGGCATCCTAGCTATATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGAGAATAAACGAAGCTCAATTAGTGAGGCATATTCGCATCCTGGTGCCATTCTTACGCATAATGATTCCAGTCTCATGAACTTCTCCTCACCTCCAGGAGTTCAAAAGGTCAGAAACTCTGCTGGCCAAGGAATGCAGCAGGATCAACTTAAAAGTGACAAGTTTCAGCTTGAAAGAGTACAAATCCTTGGAAGTCATGATTCACCACTACGCTTAATAGATTTAAATGATGTAGTAAACTATGAAGAGTTTTTGAAAATCTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTTTCTTCCTGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCCATAGCTCTCAATTCAAGGAGAACTTAAGTTATTTTCAGCAGCTTCTCACGGAAGGTGTCTTTGATATCTCTTTGTTGGGTCCAAAACCTGAAGACTGCAAGACTTTGAAAAGTCTTGTATTGTCCAATCTGTCAAAATCAAAATGGGTAGAACACTATAATTTTCTGAAGAGATGTAAACACAGAGCTGGAAAATCTGGTGCTCTGGGATCTACTGGGACAGCATCAATTAATGTTGCAAATTGCAAGAGAATGCGTGACAACCGAAATCAAACCTTTCCAGAATTGAGGACAATAATGAGGAGTCCCAAAAGTGTGATCACAAAGGCTGGCTGTGAGGGCAAAGAAGCTGCAGAAGATGGCACATGCTATAGTCCAAAAAGCTTATTTGCTTTGCCTCCTGATGCTAGCTCCCTCCTTCGGGATTCCTTAAACTTTGTAGAGGAGAGTTCTGATCAGGATCTGCTGCTAGAGGTGCCATCTAACAGTTCTTTTCCACAGGCAGAACTCCTTAACCCAACTTTAAGCTTTGGTGCTCAAACCAGTACTAGTAGTAGCTCAGTATATTCATATATTATCCACCATTAA 1626 0.4194 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRVSRVKSISLNKNKEVKLLKRKQNHDNVVSGVLAPDYNQGFRKAVDEDTSNRSSSGSAISNSESCAQFGGMDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFENETPMVSVEIGHGSVLIRHPSYIAREEESEASSLSVENKRSSISEAYSHPGAILTHNDSSLMNFSSPPGVQKVRNSAGQGMQQDQLKSDKFQLERVQILGSHDSPLRLIDLNDVVNYEEFLKILTNEEQQQLLKFLPVVDTAKLPDSLKVMFHSSQFKENLSYFQQLLTEGVFDISLLGPKPEDCKTLKSLVLSNLSKSKWVEHYNFLKRCKHRAGKSGALGSTGTASINVANCKRMRDNRNQTFPELRTIMRSPKSVITKAGCEGKEAAEDGTCYSPKSLFALPPDASSLLRDSLNFVEESSDQDLLLEVPSNSSFPQAELLNPTLSFGAQTSTSSSSVYSYIIHH 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4282g00071 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Gabi4282g00071 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 533 IPR044589 -
Gabi4282g00071 541 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Gabi4282g00071 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Gabi4282g00071 541 FunFam GATA transcription factor 27 3 85 - -
Gabi4282g00071 541 Pfam Asx homology domain 290 368 IPR028020 -
Gabi4282g00071 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Gabi4282g00071 541 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Gabi4282g00071 541 Gene3D - 292 392 IPR038108 -
Gabi4282g00071 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 408 IPR044867 -
Gabi4282g00071 541 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Gabi4282g00071 541 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4282g00071 Gabi-Chr4282 726829 732461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4282g00071 1 518 C2C2-Gata Transcription Factor Family AT4G17570 54.221 1.16e-164 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi4282g00071 ASXH 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4282g00071 - - gmx:100803914 850.506