Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4282g00067 ATGGAACTTAATTTTAAGCACCAACTTGGCCTTGTTTGTGTGACACTGCTCTTACCTGCCATGTGTACCTCTTTGGACAATTTTACGCCCTCCAGAGCAACCTATTACGGTAGCCCAGATGGCTATGGAAATCCAAGGGGAGCTTGTGGCTTTGGCTATTATGGCAAGACGGTAAACGATGGCAGAGTAGCAGGCGTGTCAGGGTTATGGAAGAATGGAGCTGGCTGTGGTGCATGCTATCGGGTTAGGTGCAAAATACCACAATACTGTGATGAATATGGAGCATATGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTCATCATGAGTCCACGTGGCTATTCAAGTTTGGGTAGAAATGACGATGCTTCTGCAGAGCTTTCCAAATACGGTGTGGTTGATGTAGAATACAAAAGGGTTCCCTGCAAATACGGTGGCAATAATAACGTCTTGCTTAAGGTCCATGAGAGCAGCAAAAACCCTTACTACTTAGCGATTCTCGTTCTCTATGTTGGTGGAACATACGATGTGACTGCTATGGAGTTGTGGCAGGAAGATAGCAAAGAGTGGAGGCCAATGCGTAGGGCCTATGGGGCAGTGTTTGATGCTGCTAACCCTCCTAGGGGTGACATCAAGATGAGGTTCCAAGTAAGTGGTAGTGCAGGACTGAATTGGGTGGAGTCCAAGAATGTTATCTCTTCTAAATGGAAGGGTGGAGCTGTTTATGACACACAAATTCAGCTTGATTAA 759 0.4611 MELNFKHQLGLVCVTLLLPAMCTSLDNFTPSRATYYGSPDGYGNPRGACGFGYYGKTVNDGRVAGVSGLWKNGAGCGACYRVRCKIPQYCDEYGAYVVVTDYGEGDRTDFIMSPRGYSSLGRNDDASAELSKYGVVDVEYKRVPCKYGGNNNVLLKVHESSKNPYYLAILVLYVGGTYDVTAMELWQEDSKEWRPMRRAYGAVFDAANPPRGDIKMRFQVSGSAGLNWVESKNVISSKWKGGAVYDTQIQLD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4282g00067 252 Gene3D - 18 146 IPR036908 -
Gabi4282g00067 252 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Gabi4282g00067 252 Gene3D - 147 251 IPR036749 -
Gabi4282g00067 252 PANTHER EXPANSIN-B3 17 250 - -
Gabi4282g00067 252 CDD DPBB_EXLB_N 31 145 - -
Gabi4282g00067 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gabi4282g00067 252 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Gabi4282g00067 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Gabi4282g00067 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Gabi4282g00067 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gabi4282g00067 252 SUPERFAMILY Barwin-like endoglucanases 13 150 IPR036908 -
Gabi4282g00067 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Gabi4282g00067 252 Pfam Expansin C-terminal domain 155 235 IPR007117 -
Gabi4282g00067 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Gabi4282g00067 252 Pfam Lytic transglycolase 63 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4282g00067 Gabi-Chr4282 676495 679010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4282g00067 9 251 Expansin Gene Family AT4G17030 58.197 1.89e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4282g00067 - - ccaj:109800044 437.573