Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4282g00049 ATGCATTGTAGCTCGGGCGTTGCGGGGAGAACGCGTTCTAGAAAAGCCCCATTCGACAAACAACAAAACTCGCATAATGTGAAAAAACAGAGCAACGTTGACCACAAATGGGACGACGAGGTTGTTGATCTCAGTTTCGACGACGACAACGATGTCATTGTTTTTGATGAAACTGAACAGGAGAGCGAAACTAGTCACAGCGAAAGCGAAACTAGTTACAGCGAAAGCGAAATTAGTGACAGCGAAAGCGAGTATTCGGATGAAGAGGTGTACGAAGCGATAAACGATGATGTTGAAAGAAGAAGAAGCATGGGCAGGGCGAAAAGGGAAACGAACGCGAAAATGATTGATTTTGGAGTGTGGAGGAGGAAAGCTTACGGTTTGGATTTATTGATAGATGAGAATGCGAGAGATGAGTGTAGTTCTTCAGCACAGAGGACCCGTTCTCATTTTCTCAGGAACAAGAAATTGAAGATGGGGACTTTTAGTCAACCTATTTGTCTCGATGAAGAGGATGAAGAGGAACAGTCTCTCACTGACACTACTGTTGAACCTGATTTGGGTGAAACAAATATTTATGAGTTAAGTGTGCGCAAAGTGCATAAGAAAGGGAAGATGGGGAAACTTTCTAGGAAAAAACACATTCATGATTCACTAGATTTTCATGTGTTTGAGACTCTTCAGGATTGTATTAATGGGAAGGTAATAGGCCAGGAACCTAAAACAAATATGGATTTTCCACCCAAGTTTACTTTTATAGGTGATGAGGATGAAGAGCAACCAACACCGGAGAAATCGGAGATATCAGAGAGATCAAAGATTGAGAAGGAATTAGATGAAATTTGGGATGAGATGGCCTCTTGTCTTAATGCTAGCCAAGATAATTCTGGTGGTTTTGTTGAAGAAAAATCTAGTGGCTGTAAGAGGGATTGGCTTAAAGAGGGAAGTGTTTTTGTTGAAAAAAAATCAAGTGGTTGCAAGAGGGATTGGCTTGAAGAGGAAGGGGGTTTTGTCGAAAAAAAATCTAGTGGTCACAAGAGGGAAGGCTATGCATTCCCGAAGAAGAAACAGGTCCATGATATAGAAGATTTTGGTGTTATTAACATTCTTCAGGATTCTATTTATGGTAAGGGAGAGGTGCCTGTGGAGGCTAACGATGATGAACTGAATCCAAAAATAGATTTACCACCATTGAAATTTACTTTTCTAACTGAGGAGCCACAGCCAGTGGAGAAGTCAGAATACGAGAAAGAATTAGATGCACTTTGGATTGAGATGGACTATTGTCTCAATGCTACCCAACACAACTCTATTCCTCCTTCTCAGGTTCAAGATAATATTGATTTTGATCATGATCAATATCCATTGGATAAAGTTACAACAGCTACTCTTTGTCGTCAAGGGAAGCATCATCTCATTCTTAATGAGGAAATTGGACTTTTATGTGCATATTGCCCACATGTCCAATTGGAGATTAAGTATATTTTACCTCCCTTGTGTGAAAATCCATATGGAAAATCAAACAGGAGAGACTATTGCACTTTCGACCCTATGGACCAGTCTGTCTTCGATGAGCTCCGGCATGGAATTGTTGGACATGATGATTATAATCTCTGTGATTACGCTGGGACAGTGTGGGATATAATTCCTGGAGTGAAAAAGACAATGTATCCTCATCAGTGTGATGCTTTCGAGTTTCTCTGGAGTAATTTAGCTGGTGGAATTTTTCTTGATAAGTTGAAAAAACAGAAGGATTTTCCTGGTGCGAGTGGATGCATTATATCTCATGCTCCTGGGACAGGGAAAACCCGTCTTACCATTGTATTTCTTCAGACATACATGGAGTTATATCCAACGTGCAGACCAATGATTATTGCTCCTAAAGGGATGCTTCTTACATGGGAAGAGGAGTTCAAAACTTGGAAGGTTGACATTCCCTTTCATAATTTGAACAATTCTGACTACTCTGGCAAGGAGAGTGAGGAAGCTATGAATCTTGTTAGGAATTCTTGTCGTAATGTCTCAACCAAATTAGCTAAGTTGTATTGTCGTGTCGCTAAGTTGTATTCTTGGAAGTGTAACAAATCCATCTTGGGAATTAGTTACAAACTGTTTGAGCAACTTACTAGTCAGAGCTCCAATGACAAGGAGTTGAGGAAAGTCCTTCTTGAACATCCTGGTTTATTGGTTCTTGACGAGGGTCACACTCCTCGTAATTCCCATAGTCTTATATGGAAATCCGTCTCAGAAATCCAGACAAAAAGACGCATCATCCTCTCTGGAACTCCCTTTCAGAATAATTTTGATGAGCTATACAACACACTTTGCTTGGCGAGGCCTAAGTTTGCTGAACGGAATCTATCCGGAGGAGGCAATGTGGTATTTGATGACAAGCGGGGGAATCCAAGAAACGAAAGCAAAGGGAAATGGGTGCATTTGACCACTTCATATGGAAAAGTTTCTGATGATAATGGAAGATTTGAGATATTGAAAGAGATCAGAGACATGATTAGTCCTTTTGTTCATGTACACAAGGGAACCATACTACAAGAGAGACTACCTGGGTTGAGGAAGTTAGTAGTTTTTTTAAAGCCTACACAGTTGCAGAAGGAAATTTTTGAGGATATTCAGAAAAAAAGGACAAGCCTTGCTCAGGGAAAGATATACTTGAATGTGCTGAAACTAGAATATGAGGAGTCTGTAGCTGCTGTTCATCCCGCGCTCTTCAGTCTATCCGAAGGCAAGGAGAAGTTCCAACGGTTTAGATTGAATCCTGAGGAAGGTGTCAAAACGAAATTCTTAATGGAACTTATCAGACTTTGTGGGCTTGTGAATGAAAAAGTTTTGGTTTTTAGCCAATATATTGATCCTTTGAATCTTCTGGCAAGCCAGCTTAAATATCATTTTGGTTGGAATCAAGGACGAGAGGTGCTAATAATACATGGAAAAGTTGAAGTAAAGCTGCGTCAAGCTTCAATAAAAGCTTTTAACGATCCCAGTAGCAATGTAAGGGTGATGCTAGCATCAACAAAGGCTTGTTATGAAGGTATCAGTTTGGTTGGTGCCTCAAGGGTTGTTTTACTTGATGTTGTATGGAATCCCTCAGTGGAGAGGCAAGCAATAAGTCGTGCTTATCGACTTGGGCAGAAGAAATTCGTGTACACTTATCATCTCATCACAGCAGGGACAATGGATGAGGACAAATGTTGTCGTCAAGCTGAGAAAGATCAGTTATCAGAGTTGGTGTTCTTTAATTCCCATGGTGATGGTGCTCAAAAATTCTCATCCCTAGAATTAGAAGATCGAATCTTGGAAGACATGGTTCAACACGAAAAGTTTCAACATATATTTGAAAGAGTAGCTATTAACCATTAA 3375 0.4027 MHCSSGVAGRTRSRKAPFDKQQNSHNVKKQSNVDHKWDDEVVDLSFDDDNDVIVFDETEQESETSHSESETSYSESEISDSESEYSDEEVYEAINDDVERRRSMGRAKRETNAKMIDFGVWRRKAYGLDLLIDENARDECSSSAQRTRSHFLRNKKLKMGTFSQPICLDEEDEEEQSLTDTTVEPDLGETNIYELSVRKVHKKGKMGKLSRKKHIHDSLDFHVFETLQDCINGKVIGQEPKTNMDFPPKFTFIGDEDEEQPTPEKSEISERSKIEKELDEIWDEMASCLNASQDNSGGFVEEKSSGCKRDWLKEGSVFVEKKSSGCKRDWLEEEGGFVEKKSSGHKREGYAFPKKKQVHDIEDFGVINILQDSIYGKGEVPVEANDDELNPKIDLPPLKFTFLTEEPQPVEKSEYEKELDALWIEMDYCLNATQHNSIPPSQVQDNIDFDHDQYPLDKVTTATLCRQGKHHLILNEEIGLLCAYCPHVQLEIKYILPPLCENPYGKSNRRDYCTFDPMDQSVFDELRHGIVGHDDYNLCDYAGTVWDIIPGVKKTMYPHQCDAFEFLWSNLAGGIFLDKLKKQKDFPGASGCIISHAPGTGKTRLTIVFLQTYMELYPTCRPMIIAPKGMLLTWEEEFKTWKVDIPFHNLNNSDYSGKESEEAMNLVRNSCRNVSTKLAKLYCRVAKLYSWKCNKSILGISYKLFEQLTSQSSNDKELRKVLLEHPGLLVLDEGHTPRNSHSLIWKSVSEIQTKRRIILSGTPFQNNFDELYNTLCLARPKFAERNLSGGGNVVFDDKRGNPRNESKGKWVHLTTSYGKVSDDNGRFEILKEIRDMISPFVHVHKGTILQERLPGLRKLVVFLKPTQLQKEIFEDIQKKRTSLAQGKIYLNVLKLEYEESVAAVHPALFSLSEGKEKFQRFRLNPEEGVKTKFLMELIRLCGLVNEKVLVFSQYIDPLNLLASQLKYHFGWNQGREVLIIHGKVEVKLRQASIKAFNDPSSNVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTMDEDKCCRQAEKDQLSELVFFNSHGDGAQKFSSLELEDRILEDMVQHEKFQHIFERVAINH 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4282g00049 1124 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 583 781 IPR014001 -
Gabi4282g00049 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 783 IPR027417 -
Gabi4282g00049 1124 MobiDBLite consensus disorder prediction 252 272 - -
Gabi4282g00049 1124 Pfam Helicase conserved C-terminal domain 937 1048 IPR001650 -
Gabi4282g00049 1124 SMART ultradead3 552 794 IPR014001 -
Gabi4282g00049 1124 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4282g00049 1124 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 936 1105 IPR001650 -
Gabi4282g00049 1124 CDD SF2_C_SNF 930 1059 - -
Gabi4282g00049 1124 Pfam SNF2-related domain 589 881 IPR000330 GO:0005524|GO:0140658
Gabi4282g00049 1124 Gene3D - 854 1122 IPR027417 -
Gabi4282g00049 1124 Gene3D - 541 793 IPR038718 -
Gabi4282g00049 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 724 1083 IPR027417 -
Gabi4282g00049 1124 SMART helicmild6 959 1048 IPR001650 -
Gabi4282g00049 1124 MobiDBLite consensus disorder prediction 75 89 - -
Gabi4282g00049 1124 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 354 1120 IPR044567 GO:0080188
Gabi4282g00049 1124 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4282g00049 Gabi-Chr4282 570656 575331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4282g00049 942 1101 RAD5 or RAD16-like Gene Family AT1G11100 34.969 9.85e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4282g00049 SNF2_N 4.8e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4282g00049 K10875 - qsa:O6P43_024431 820.846