Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4282g00047 ATGAAGTGTTTATTCTTCAAACAAAAATCCAAATCCGACCCAGAATTAAAAAACCCAAGCAAGAAGAAAAATCAGGCTTTGAATCGAGCAACTAAGTCCACCAGTTCGCTATCATCGCCAAGGAGTTTAAAAGAATTGTACAAAGAGAAAGAACACAATTTCAGAGTTTTTACTTTGCAAGAACTCGTGGATGCAACACATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGCTTTGGGAAGGTATATAGAGGAACAATTAGTTCTGAAGGTGGACAAGGTGATTCAATTGTGGTTGCAATAAAAAAACTTAACACGTTTGGCTACCAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATAGTTAATCACCCGAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATGGGGAAAGACGAATCCAACGGCTGTTGGTGTATGAGTTCATGCCCAACAAGAGCCTAGAAGATCATCTTTTCAATCGTTCTTTACCTCACTTGCCTTGGAGAACAAGGTTGCAGATCATGCTCGGTGCTGCTCAAGGATTACATTATCTACATGAGGGATTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTACTATTGGACACGAATTTCCATCCCAAGCTCTCAGATTTTGGTCTTGCTCGGGAGGGTCCAAAAGGTGATCAGACTCATGTATCTACTGCGGTAGTTGGGACAGAGGGATATGCTGCCCCGGAGTATGTTAGAACAGGTCATCTCAAAGCTCAGAATGACATTTGGAGTTTTGGTGTGGTACTTTATGAGATCATCACAGGAAGGAGGGCATTGGAAAGGAACCTTCCGCCAGTGGAACAAAAGCTTTTAGAGTGGGTTACAATATACCCTGCTGAGAGTAGCGGATTCAGCACCATAATGGACCCGCGTCTCAAGAACCAATATTCTCTTAGCGCAGCTCGTAAAATAGCCAAGTTGGCAGATAGCTGCTTAAAGAAGAATCCTGAACAAAGGCCATCCATGAGTCAAATAGTAGAAAGCTTGAAGCAAGCATTGCATTATTCAGAAACCTCAAGCACTTCTAAGAATATGACTTCTGTATCCTCTCGATCTAAATTGGTTCGAAAAGGCAAATAG 1143 0.4208 MKCLFFKQKSKSDPELKNPSKKKNQALNRATKSTSSLSSPRSLKELYKEKEHNFRVFTLQELVDATHGFNRMLKIGEGGFGKVYRGTISSEGGQGDSIVVAIKKLNTFGYQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERRIQRLLVYEFMPNKSLEDHLFNRSLPHLPWRTRLQIMLGAAQGLHYLHEGLEVQVIYRDFKSSNVLLDTNFHPKLSDFGLAREGPKGDQTHVSTAVVGTEGYAAPEYVRTGHLKAQNDIWSFGVVLYEIITGRRALERNLPPVEQKLLEWVTIYPAESSGFSTIMDPRLKNQYSLSAARKIAKLADSCLKKNPEQRPSMSQIVESLKQALHYSETSSTSKNMTSVSSRSKLVRKGK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4282g00047 380 Gene3D Transferase(Phosphotransferase) domain 1 155 376 - -
Gabi4282g00047 380 Gene3D Phosphorylase Kinase; domain 1 26 154 - -
Gabi4282g00047 380 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Gabi4282g00047 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Gabi4282g00047 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 365 - -
Gabi4282g00047 380 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4282g00047 380 MobiDBLite consensus disorder prediction 357 374 - -
Gabi4282g00047 380 PANTHER OS01G0588500 PROTEIN-RELATED 28 352 - -
Gabi4282g00047 380 ProSitePatterns Protein kinases ATP-binding region signature. 75 104 IPR017441 GO:0005524
Gabi4282g00047 380 MobiDBLite consensus disorder prediction 1 42 - -
Gabi4282g00047 380 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4282g00047 380 CDD STKc_IRAK 75 352 - -
Gabi4282g00047 380 MobiDBLite consensus disorder prediction 23 42 - -
Gabi4282g00047 380 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4282g00047 380 MobiDBLite consensus disorder prediction 357 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4282g00047 Gabi-Chr4282 533829 536495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4282g00047 3 350 Glycoside Hydrolase AT3G07070 42.179 4.40e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4282g00047 Pkinase 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4282g00047 - - gmx:100305403 591.267