Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4282g00046 ATGATTTTGAAAATGAAGTGTTTATTCTTCAAACAAAAATCCAAATCCGACCCAGAATTAAAAAACCCAAGCAAGAAGAAAAATCAGGCTTTGAATCGAGCAACTAAGTCCACCAGTTCGCTATCATCGCCAAGGAGTTTAAAAGAATTGTACAAAGAGAAAGAACACAATTTCAGAGTTTTTACTTTGCAAGAACTCGTGGATGCAACACATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGCTTTGGGAAGGTATATAGAGGAACAATTAGTTCTGAAGGTGGACAAGGTGATTCAATTGTGGTTGCAATAAAAAAACTTAACACGTTTGGCTACCAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATAGTTAATCACCCGAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATGGGGAAAGACGAATCCAACGGCTGTTGGTGTATGAGTTCATGCCCAACAAGAGCCTAGAAGATCATCTTTTCAATCGTTCTTTACCTCACTTGCCTTGGAGAACAAGGTTGCAGATCATGCTCGGTGCTGCTCAAGGATTACATTATCTACATGAGGGATTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTACTATTGGACACGAATTTCCATCCCAAGCTCTCAGATTTTGGTCTTGCTCGGGAGGGTCCAAAAGGTGATCAGACTCATGTATCTACTGCGGTAGTTGGGACAGAGGGATATGCTGCCCCGGAGTATGTTAGAACAGGTCATCTCAAAGCTCAGAATGACATTTGGAGTTTTGGTGTGGTACTTTATGAGATCATCACAGGAAGGAGGGCATTGGAAAGGAACCTTCCGCCAGTGGAACAAAAGCTTTTAGAGTGGGTTACAATATACCCTGCTGAGAGTAGCGGATTCAGCACCATAATGGACCCGCGTCTCAAGAACCAATATTCTCTTAGCGCAGCTCGTAAAATAGCCAAGTTGGCAGATAGCTGCTTAAAGAAGAATCCTGAACAAAGGCCATCCATGAGTCAAATAGTAGAAAGCTTGAAGCAAGCATTGCATTATTCAGAAACCTCAAGCACTTCTAAGAATATGACTTCTGTATCCTCTCGATCTAAATTGGTTCGAAAAGGCAAATAG 1155 0.4182 MILKMKCLFFKQKSKSDPELKNPSKKKNQALNRATKSTSSLSSPRSLKELYKEKEHNFRVFTLQELVDATHGFNRMLKIGEGGFGKVYRGTISSEGGQGDSIVVAIKKLNTFGYQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERRIQRLLVYEFMPNKSLEDHLFNRSLPHLPWRTRLQIMLGAAQGLHYLHEGLEVQVIYRDFKSSNVLLDTNFHPKLSDFGLAREGPKGDQTHVSTAVVGTEGYAAPEYVRTGHLKAQNDIWSFGVVLYEIITGRRALERNLPPVEQKLLEWVTIYPAESSGFSTIMDPRLKNQYSLSAARKIAKLADSCLKKNPEQRPSMSQIVESLKQALHYSETSSTSKNMTSVSSRSKLVRKGK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4282g00046 384 Gene3D Phosphorylase Kinase; domain 1 30 158 - -
Gabi4282g00046 384 ProSitePatterns Protein kinases ATP-binding region signature. 79 108 IPR017441 GO:0005524
Gabi4282g00046 384 MobiDBLite consensus disorder prediction 27 46 - -
Gabi4282g00046 384 MobiDBLite consensus disorder prediction 14 46 - -
Gabi4282g00046 384 MobiDBLite consensus disorder prediction 361 384 - -
Gabi4282g00046 384 Pfam Protein kinase domain 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4282g00046 384 SUPERFAMILY Protein kinase-like (PK-like) 55 354 IPR011009 -
Gabi4282g00046 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Gabi4282g00046 384 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4282g00046 384 CDD STKc_IRAK 79 356 - -
Gabi4282g00046 384 MobiDBLite consensus disorder prediction 361 378 - -
Gabi4282g00046 384 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 159 369 - -
Gabi4282g00046 384 Gene3D Transferase(Phosphotransferase) domain 1 159 380 - -
Gabi4282g00046 384 PANTHER OS01G0588500 PROTEIN-RELATED 30 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4282g00046 Gabi-Chr4282 533829 544410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4282g00046 7 354 Glycoside Hydrolase AT3G07070 42.179 6.59e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4282g00046 Pkinase 6.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4282g00046 - - gmx:100305403 591.267