Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4282g00023 ATGGCGCTTTATATTTACTGTCGTATTCTTGTTACCACCTTGCTTTTCATGCAAGCTTTGGCAGATACTTCATGCAGAGATTGTTTTATTCATTCTCGGGCAGCATATTACCCAAATTCTGAAGAACATGGGACAGATGTAGGTGCATGTGGTTTTGGTTCCTTTGGTGCTACAGTCAATGGCGGGGACGTATCAGCTGCATCGAATCTTTATCGAAACGGTGTTGGCTGTGGCGCTTGTTACCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGACAAGGGTGCAACCGTAGTTATAACTGATCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACGTGCCTTTGGTCGGATGGCTCAGACCACTGATGCAGCTGCTTCTCTATTAGGCCTTGGCGTGGTTGATATTGAATATAGACGTGTTGCATGCAGCTATCCTTACAAAAACATAACATTCAAGATAGATGAGAGCAGCAACAACCCTTATTACTTGGCTTTTGTCATATGGTATCAACAAGGTAGCAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGACAGGAGTCATGGGGCAGTCTGGACATCTACCACTCCACCGAGTGGCCCATTGTCTGTAAGGATGTTGTTTAGTGATGAAGAAAATGAAGAAGAAACATGGGTTGTTCCTGTTAATAACATACCCCAAAACTGGAAGGCTGGTGAAACATACGACTCAGGGGTACAAGTGAACCTTTAG 768 0.4414 MALYIYCRILVTTLLFMQALADTSCRDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCTNSAYCSDKGATVVITDQGSSDNTDFILSKRAFGRMAQTTDAAASLLGLGVVDIEYRRVACSYPYKNITFKIDESSNNPYYLAFVIWYQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTSTTPPSGPLSVRMLFSDEENEEETWVVPVNNIPQNWKAGETYDSGVQVNL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4282g00023 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Gabi4282g00023 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Gabi4282g00023 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Gabi4282g00023 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Gabi4282g00023 255 PANTHER EXPANSIN-B3 15 252 - -
Gabi4282g00023 255 Gene3D - 150 253 IPR036749 -
Gabi4282g00023 255 Gene3D - 18 147 IPR036908 -
Gabi4282g00023 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Gabi4282g00023 255 CDD DPBB_EXLB_N 30 146 - -
Gabi4282g00023 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Gabi4282g00023 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Gabi4282g00023 255 SUPERFAMILY PHL pollen allergen 151 249 IPR036749 -
Gabi4282g00023 255 SUPERFAMILY Barwin-like endoglucanases 18 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4282g00023 Gabi-Chr4282 190327 192527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4282g00023 11 251 Expansin Gene Family AT4G17030 42.041 6.17e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4282g00023 - - ccaj:109799868 474.552