Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4282g00011 ATGGTTTGCACTGCCAATGAATTACAGGGATGGAAAGATTTTCCAAAAGGACTTAGGGTTCTTCTTCTTGAAGGAGACATCATTTCTGCTGCAGAGATAAGAGCAAAGCTCGAGGCCATGGACTATATTGTTTCTACCTTCTGCGATGAGAATGAAGCCTTGTCTGCAATCTCGAGTAATCCTGAAGGCTTTCATGTTGCCTTAGTGGAGGTGAGTACAAGCAGTAGCCAGGGAGGTTTCAAATTTCTAGAGAATGCGAAGGGCTTGCCAACCATTATGACTTCAAACAGTCAGTGCCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCTCACTAAACCAGTATCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTATCCTGTCTGAATCATTAAAACCTGTCAAAGAATCCGTAAAATCCATGTTGCAGCTCCTAACAGACAAAGGACAACATGAAAGTACAATTTCAATAGATTTAGAGAATGTATCCAGGTTTAGTGATAATGTCCATGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCACAATTAAAACAGGCGGCAAGGTTACTGGATGATGGGGATTGCCATGAGCAGACTAATTGTTCAACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGCCGAAACTTCATGTGAGAATTTGAACGCTGAAAGTTCTCTTCAACCAAGGAAACCTGAGAAGACTATGATTAAGGAGGAAGAGGATTTTGCCAATGTTTCCAAGGGTGAAAATGCTGTATCACTGAATCCACATAATAGAAAGTTCCTCAGCAACGCTGATGGCAATACATCTCCAAATAAAGGAGGTGTTCTTAATGAATCACGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTAAAGGCAGTGGAACAGCTAGGTGTTGATCAAGCCATTCCTTCTCGAATATTGGAGCTAATGAAAGTGGACGGCTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAGTATAGAATGCACAAGAGACAAACGGTGCCCGGGGAAGAAGATCGAAAATGGCAAAATCAAAGAGATCCAACGCAAAGGAGCTATTGTATGCAAAGACCAATCATGGCCTATCCTCCATATCATTCTAATCATACCCTTTCTCCAGCTCCTGTATATCCGATGTGGGGACAACCCGGAAGTCAAGCAGGCGGTGTACAGATTTGGGGTCCTCCTGGTTATCCCTTGTGGCAACCTACAGAAAGTTGGCACTGGCAGCCTTATCCGGGGGTTCATGTGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGCTCCTTGTTTCTCCTACCCTCAAAATATAGCTGGGTTGCACAATGCTAAAGCAGTGGATTATAGATTTGGCATGCCACGAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTTGACAAGGTTGTGAAGGAGGCAATTAGCAAGCCATGGCTACCCTTGCCCTTAGGCCTCAAACCTCCTTCAATGGATAGTGTACTGGCTGAACTCTCCAAGGAAGGCATGTCCAGCATCCCTCTTGGCCGCAGCAAGGGTTCCAAGCATACCTGA 1671 0.45 MVCTANELQGWKDFPKGLRVLLLEGDIISAAEIRAKLEAMDYIVSTFCDENEALSAISSNPEGFHVALVEVSTSSSQGGFKFLENAKGLPTIMTSNSQCLNTMMKCIALGAVEFLTKPVSEDKLKNIWQHVVHKAFNAGASILSESLKPVKESVKSMLQLLTDKGQHESTISIDLENVSRFSDNVHEQSAGSDKYPAPSTPQLKQAARLLDDGDCHEQTNCSTEKESGEHDGESKSAETSCENLNAESSLQPRKPEKTMIKEEEDFANVSKGENAVSLNPHNRKFLSNADGNTSPNKGGVLNESREIKANRKKMKVDWTPELHKKFVKAVEQLGVDQAIPSRILELMKVDGLTRHNVASHLQKYRMHKRQTVPGEEDRKWQNQRDPTQRSYCMQRPIMAYPPYHSNHTLSPAPVYPMWGQPGSQAGGVQIWGPPGYPLWQPTESWHWQPYPGVHVDAWGCPVLPPPQAPCFSYPQNIAGLHNAKAVDYRFGMPRSSFEHHPAEEVVDKVVKEAISKPWLPLPLGLKPPSMDSVLAELSKEGMSSIPLGRSKGSKHT 556
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi4282g00011 556 MobiDBLite consensus disorder prediction 238 252 - -
Gabi4282g00011 556 SUPERFAMILY Homeodomain-like 312 369 IPR009057 -
Gabi4282g00011 556 FunFam Two-component response regulator-like APRR2 17 143 - -
Gabi4282g00011 556 FunFam Two-component response regulator 309 371 - -
Gabi4282g00011 556 Gene3D - 18 140 - -
Gabi4282g00011 556 MobiDBLite consensus disorder prediction 368 384 - -
Gabi4282g00011 556 SUPERFAMILY CheY-like 16 134 IPR011006 -
Gabi4282g00011 556 MobiDBLite consensus disorder prediction 281 300 - -
Gabi4282g00011 556 MobiDBLite consensus disorder prediction 367 387 - -
Gabi4282g00011 556 MobiDBLite consensus disorder prediction 214 256 - -
Gabi4282g00011 556 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 546 IPR044825 GO:0003700|GO:0045893
Gabi4282g00011 556 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Gabi4282g00011 556 Pfam Myb-like DNA-binding domain 316 365 IPR001005 -
Gabi4282g00011 556 SMART REC_2 18 128 IPR001789 GO:0000160
Gabi4282g00011 556 MobiDBLite consensus disorder prediction 214 237 - -
Gabi4282g00011 556 MobiDBLite consensus disorder prediction 281 301 - -
Gabi4282g00011 556 Gene3D - 309 370 - -
Gabi4282g00011 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Gabi4282g00011 556 NCBIfam myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi4282g00011 Gabi-Chr4282 82438 89860 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4282g00011 1 546 Response Regulator Gene Family AT4G18020 49.138 3.83e-143 422
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi4282g00011 Myb_DNA-binding 3.7e-09 CL0123