Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00086 ATGGCTTTGGAAACTCCTTCATCCAATGAGTTTTCCAACTTCATTATCTATGACACCATCTCTGCTACTCCATTTAGCAGCCACGTCTCTTTAGCGGCTAGTTTCTTGTTAGATCAGAATATAGTGAACAATCAGGAACATGACCCTGCATTTTATAACTGTGCTCCGAGGACCCGAAAACGCCAATCCAGTGAGCCAGAAACCATTGGCAAAAGGCAGAATCTCACGGTGCAAGGGAGGAAGAAGAGGAGAAGGAAGCCAAGGGTTTGCAAAAGCAAGGAAGAATCTGAGACACAAAGAATGACACACATTACAGTAGAAAGAAACCGCAGGAAGCAGATGAATGAGCATTTTGCTGTTCTTCGTTCACTCACACCTGAGAACTATGTCCAAAGGGGTGATCAGGCCTCTATAGTGGGTGGTGCAATAGAATTTGTAAAGGATCTGGAGTACCTCTTGCAGTCACTTGAAGCTAGAAAGCTGCAACTTTTACAGCAAGAAATGGCACAAACCAATGAAGATACGGCCATTTCAAAACTCATGAGACCCCCTTTTGCGCAATTTTTCATGTATCCTCAATACACATGGTCCCAGACTCCTAACAAATACACATCCAAGACCAAGGCTGCAATAGCTGATATCGAGGTTACTTTAATCGAGACCCATGCAAACCTTCGAGTACTCACTAGAAGAAGCCCCGGGCAGCTAACAAAGTTGGTTACTGGTTTTCAAACACTCCACCTTACCATCCTACATCTCAATGTTACTACAATGGACCCTTTGGTATTCTATTCTATCAGTGCCAAGGTTGAAGAAGGATTTGAACTTGGTTCAGTAGATGACATTGCAACGGCAGTTCATCTTTTGCTTGGAAGATTTGAGGAAGAAGCTTCCCTTTGCTGTTGA 906 0.4349 MALETPSSNEFSNFIIYDTISATPFSSHVSLAASFLLDQNIVNNQEHDPAFYNCAPRTRKRQSSEPETIGKRQNLTVQGRKKRRRKPRVCKSKEESETQRMTHITVERNRRKQMNEHFAVLRSLTPENYVQRGDQASIVGGAIEFVKDLEYLLQSLEARKLQLLQQEMAQTNEDTAISKLMRPPFAQFFMYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRVLTRRSPGQLTKLVTGFQTLHLTILHLNVTTMDPLVFYSISAKVEEGFELGSVDDIATAVHLLLGRFEEEASLCC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00086 301 SMART finulus 104 155 IPR011598 GO:0046983
Gabi4281g00086 301 Gene3D - 89 178 IPR036638 GO:0046983
Gabi4281g00086 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 149 IPR011598 GO:0046983
Gabi4281g00086 301 Coils Coil 146 173 - -
Gabi4281g00086 301 Pfam Helix-loop-helix DNA-binding domain 99 150 IPR011598 GO:0046983
Gabi4281g00086 301 PANTHER MAX DIMERIZATION, MAD 45 297 - -
Gabi4281g00086 301 MobiDBLite consensus disorder prediction 57 101 - -
Gabi4281g00086 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00086 Gabi-Chr4281 815797 817811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00086 90 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 53.846 7.82e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4281g00086 HLH 9.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00086 - - pvu:PHAVU_003G284500g 480.715