Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00084 ATGTCTTTGCCGACACCGGACATAAACACAACGCCGGCCGCACCGTACAACACACCACCAGCACTGATAGCGTTCACCATTGCCATCCTTGTCCTCTGCTTCGTGGCTTTTAGCATTATCTATTTGTGCAAGTATTATTTTGTAAGCGTTATCCACACTTGGGCGTTTCAACGCACTGCCTCAGGTACCCTCAATCGTGTTTCACCAAATAGGTCTCCACCTAGAGGCCTTGATCCTTCATTGCTGCAAGTGTTCCCCACCTTTCTCTATTCCTCCGTGAAGGACCTCCGAAAGGAAAAGTATAGCCTTGAATGCGCCATTTGCTTGCTCGAATTCGAAGATGATAGCATGCTTCGCCTCTTGACCTTTTGCTGCCATGTCTTCCACCAAGAATGCATTGACCTTTGGCTTAGTTCCCACAAGACATGCCCCGTTTGTCGAACGGAACTTGATTCACCAACAGAACAAATGCGAAAATCCTGTGAGTGTCATCATGTAGAAGGCAGCATGGTGTCCTTAACCAGTGATCATGACATAAGCATTAATGTTAGAGAAGGGGAAGGTGATGGTGTGAGTGCTGGAGATCAAAGACAAGAACAAGAACATGAACATGAACATGAACATGAACGTTATTGCAATCACCCGGTTTCTGTTAGTATTAGTCCGCAGCAAGAGCAAGAAGAAAACTTTATTACAAGGTCACACTCAACGGGACATTCTATAGTTATGATTAGAGGAGGAGGAGGAGAAGAAGAAAAAGATTATGATAAATATACTTTGAGATTGCCGGAACATGTTATAAGATCAGGAGGGCACAATTACACAAGGAGTTGTAAAAGTTATCAGGAAATCACAAGGCCTGCACCTTGTTGTAATCGTGGCTTTGTTACCCAAAAATCTTGA 903 0.4408 MSLPTPDINTTPAAPYNTPPALIAFTIAILVLCFVAFSIIYLCKYYFVSVIHTWAFQRTASGTLNRVSPNRSPPRGLDPSLLQVFPTFLYSSVKDLRKEKYSLECAICLLEFEDDSMLRLLTFCCHVFHQECIDLWLSSHKTCPVCRTELDSPTEQMRKSCECHHVEGSMVSLTSDHDISINVREGEGDGVSAGDQRQEQEHEHEHEHERYCNHPVSVSISPQQEQEENFITRSHSTGHSIVMIRGGGGEEEKDYDKYTLRLPEHVIRSGGHNYTRSCKSYQEITRPAPCCNRGFVTQKS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00084 300 SMART ring_2 105 146 IPR001841 -
Gabi4281g00084 300 MobiDBLite consensus disorder prediction 183 210 - -
Gabi4281g00084 300 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Gabi4281g00084 300 FunFam E3 ubiquitin-protein ligase ATL6 65 153 - -
Gabi4281g00084 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 154 IPR013083 -
Gabi4281g00084 300 SMART ringv_2 104 147 IPR011016 GO:0008270
Gabi4281g00084 300 Pfam Ring finger domain 104 147 IPR001841 -
Gabi4281g00084 300 SUPERFAMILY RING/U-box 99 154 - -
Gabi4281g00084 300 PANTHER RING FINGER DOMAIN-CONTAINING 10 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00084 Gabi-Chr4281 799168 800736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00084 20 268 Rapid Response to Elicitors AT2G35000 33.462 1.03e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00084 - - gmx:100815505 342.813