Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00083 ATGGATTACGGTCGAGAAGGGAACGTTGTTCAAATAATCAACGGCGGAGGAGAAAGCTGGTCCGGCGGCGACCAGGCCGATTGGGCGACGGAAGACGAATATCGATTCTGGAACAACAACGGCGATTCCGAAACGACGCCGTCGAACTCGAGTTACGAGCCGAGACAGGGTTCGTCGAGGTCGGGGAGCGAGCCACCGAGCAAGAAATCTCGGAATTCACAAGATGGAAGTTCGAATAACAGGTCGAAGGCGATTGGGAAGATGTTCTTCAAGACCAAACTATGCTGCAAGTTCCGTGCTGGGACCTGTCCCTATATAACTAACTGCAATTTCGCCCATAGTATCGAGGAGCTCCGCCGTCCACCGCCGAATTGGCAGGAAATCGTGGCGGCACATGAGGAGGAGAAGGCCGTGATTATGTTGGAGCCGAGGGAAGAGTTCCAGATTCCGACTCTCGGGTCTTCGGGTTTCGCGGGTGAGGCGATGCAGCGGTCTTATAAGGGCCGGCATTGCAAGAAGTTTTACACGGAGGAAGGGTGTCCCTATGGGGATAGTTGCACGTTTCTTCATGATGAGCAATCCAAGAATCGCGAGAGCGTGGCTATAAGTTTAGGCCCTGGTGGTTATGCTGGTGGCGGCAGCGGTGGTGGTAATGGTACCGGTGGTGGTGGTGGTAATGGTGGTGGTGGTGGTGGTGGTGCTGCTGCTCCTGTTGCTGCTACTGGTGGTGGAAATGGATCTAATTTAAAGCCTTCTAATTGGAAAACGAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCGTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAATTGCACAGATATGGAGGTGGGCTTATGGAGGGAGAAAATAGAGACACTGCTTCCCCTGTAGCTCCTGACACAAAACAAGGAGTACCTTCAAAAACTCCTGCTGATAATGTGGTTGCATCAGTTACTCCTGTTGCTCATTCTGATATTTATCATATTGGTGTCCCTTCACAAAGGCCTTCCATTGTGAATCAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAAGATATATGGTGATTGGATTGATGACATCGAATAG 1125 0.5022 MDYGREGNVVQIINGGGESWSGGDQADWATEDEYRFWNNNGDSETTPSNSSYEPRQGSSRSGSEPPSKKSRNSQDGSSNNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVIMLEPREEFQIPTLGSSGFAGEAMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGSGGGNGTGGGGGNGGGGGGGAAAPVAATGGGNGSNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDTASPVAPDTKQGVPSKTPADNVVASVTPVAHSDIYHIGVPSQRPSIVNQRPGQRTHQKWKGPDKISKIYGDWIDDIE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00083 374 Pfam CCCH-type zinc finger 169 191 IPR041367 -
Gabi4281g00083 374 MobiDBLite consensus disorder prediction 339 358 - -
Gabi4281g00083 374 FunFam Zinc finger, CCCH-type 159 197 - -
Gabi4281g00083 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Gabi4281g00083 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 279 IPR000571 GO:0046872
Gabi4281g00083 374 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Gabi4281g00083 374 MobiDBLite consensus disorder prediction 301 316 - -
Gabi4281g00083 374 SUPERFAMILY CCCH zinc finger 250 284 IPR036855 GO:0046872
Gabi4281g00083 374 SUPERFAMILY CCCH zinc finger 164 193 IPR036855 GO:0046872
Gabi4281g00083 374 Gene3D - 247 285 - -
Gabi4281g00083 374 Gene3D - 84 120 - -
Gabi4281g00083 374 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
Gabi4281g00083 374 SUPERFAMILY CCCH zinc finger 87 120 IPR036855 GO:0046872
Gabi4281g00083 374 PANTHER CCCH ZINC FINGER/TIS11-RELATED 234 301 IPR045877 GO:0003729
Gabi4281g00083 374 FunFam Zinc finger CCCH domain-containing protein 85 121 - -
Gabi4281g00083 374 SMART c3hfinal6 165 192 IPR000571 GO:0046872
Gabi4281g00083 374 SMART c3hfinal6 89 115 IPR000571 GO:0046872
Gabi4281g00083 374 SMART c3hfinal6 253 280 IPR000571 GO:0046872
Gabi4281g00083 374 ProSiteProfiles Zinc finger C3H1-type profile. 253 281 IPR000571 GO:0046872
Gabi4281g00083 374 MobiDBLite consensus disorder prediction 295 316 - -
Gabi4281g00083 374 MobiDBLite consensus disorder prediction 1 82 - -
Gabi4281g00083 374 Gene3D - 158 205 - -
Gabi4281g00083 374 MobiDBLite consensus disorder prediction 39 82 - -
Gabi4281g00083 374 FunFam zinc finger CCCH domain-containing protein 15-like 247 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00083 Gabi-Chr4281 795366 799011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00083 255 283 C3H Transcription Factor Family AT1G68200 62.069 4.11e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4281g00083 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00083 - - pcin:129284509 593.193