LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4281g00079	ATGGAGTCACCTGTTGATGGAGCAGAGTCCTTATCAGAGATTCAAAATTCAGTTTCTGGGGTAGATCTTGATCCTCCTTCGACATCTGACACTTCCCGGCCTCCCTTAAGAGCATCTAGGAATCATTCCGGTCACCATAATTATGGAATGAAGACCATCCACCATCAAAACAGATATGTAGTTAATCAAAAGAATTCCTGTCAGGAGGCTAACAGTGTGGCGCATGAAGAAGGATTTCCAAATATGACGAAGCAGTATTATAACCCTAATGGCAAATCTGACTATGTGAGCCTTAATAAGACTGTTGAAAGTTGTTTAGGGAAGAATATCTCCACAATGGAAAAAAAATTGTGCATCAAGCAACCATCCGAAGATTCCAAGAATTGTGATTCTAGTGGCAAATTAGAATCTGACAGTCACGTATTAGGTTCATCAAAAGGAGTTATTGATCAAAAAAAGAGTTACTGTCACTCCGAGATTACTTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCTGCCACTGCCTATTCAGAAGCCAAAGAAAGTTTTACCAATACTGGAGTCAGTGAATGTGTTAGTATTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGGGAGTACTGGAAGCGATGTTAGTGATGAAAGCAGCACCAGTAGTTTGAGCAGTGCTTTGTATAAACCCCACATGGCAAATGATATAAGATGGGAAGCAATTCATGCCATCCGAGCTCGTGACGGGGTGTTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGAAGTGGAGACATAGGAAGTGTATATCTAGCAGAGTTAAGTGGCACAAGGACTTGTTTTGCCATGAAAGTAATGAACAAAACTGAGCTGGCAGGTCGAAAGAAGCATCTGAGGGCGCAGACAGAGAGAGATATATTGCAGTCTCTAGATCATCCTTTTTTACCTACATTATACACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAATTTTGCCCTGGTGGGGACCTGCATGCACTCAGGCAAAGACAAACTGGGAAGTATTTTTCAGAACATGCTGCCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTATAGAGACCTTAAACCTGAGAATGTGTTGGTGAGAGAAGATGGACATATAATGCTATCAGATTTTGATCTCTCTCTAAGGTGTGCCGTCAGTCCAACTCTAGTAAAGTCATCAAACTCCAGCTTGGAGACAAAATCCTCAGGATACTGCATGCAGCCTGCATGCATTGAGCCAACTTGTGTAATGCAGCCAGACTGCATCCAACCTTCATGTTTTACCCCGCGGTTTCTTTCTGGCAAATCCAAGAAAGAGAAAAAGTTCAAACCAAAGACTGACATGCATAATCAGGTGATCCCTCTCCCTGAGCTTATGGCTGAGCCCACAAGCGCCCGATCGATGTCCTTTGTGGGCACGCACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGGCATGGCAGTGCTGTAGACTGGTGGACGTTTGGGATATTCTTATATGAGCTTTTGTTTGGTAGAACACCATTCAAGGGTTCAGCAAATCGCGCAACTCTATTCAATGTTGTTGGCCAGCCCTTGAGATTTCCGGAATCCCCTGCTGTGAGCTTTGCTGCCAAGGACTTGATCAGGGGTTTGCTTGTGAAAGAGCCTCAGCATCGTCTTGCCTATAGACGCGGAGCAACAGAGATAAAACAACATCCATTCTTTCATAATGTTAACTGGGCACTGATCCGTTGTACAAATCCTCCAGAGGTGCCAAGACAACAGGCCATGAAAGCAGTCACAACAGCTGAAAAGGTGCCTGGTGTGACGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA	1956	0.433	MESPVDGAESLSEIQNSVSGVDLDPPSTSDTSRPPLRASRNHSGHHNYGMKTIHHQNRYVVNQKNSCQEANSVAHEEGFPNMTKQYYNPNGKSDYVSLNKTVESCLGKNISTMEKKLCIKQPSEDSKNCDSSGKLESDSHVLGSSKGVIDQKKSYCHSEITFCPSPQNSFYSATAYSEAKESFTNTGVSECVSIDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHMANDIRWEAIHAIRARDGVLEMRHFRLLKKLGSGDIGSVYLAELSGTRTCFAMKVMNKTELAGRKKHLRAQTERDILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQTGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSSLETKSSGYCMQPACIEPTCVMQPDCIQPSCFTPRFLSGKSKKEKKFKPKTDMHNQVIPLPELMAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPAVSFAAKDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCTNPPEVPRQQAMKAVTTAEKVPGVTPSGNYLDIDFF	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4281g00079	651	CDD	STKc_phototropin_like	266	625	-	-
	Gabi4281g00079	651	Gene3D	Phosphorylase Kinase; domain 1	267	351	-	-
	Gabi4281g00079	651	Gene3D	Transferase(Phosphotransferase) domain 1	500	623	-	-
	Gabi4281g00079	651	FunFam	serine/threonine-protein kinase D6PK-like	352	419	-	-
	Gabi4281g00079	651	MobiDBLite	consensus disorder prediction	9	38	-	-
	Gabi4281g00079	651	Pfam	Protein kinase domain	502	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4281g00079	651	Pfam	Protein kinase domain	269	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4281g00079	651	FunFam	serine/threonine-protein kinase D6PK-like	500	623	-	-
	Gabi4281g00079	651	ProSiteProfiles	Protein kinase domain profile.	268	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4281g00079	651	MobiDBLite	consensus disorder prediction	1	49	-	-
	Gabi4281g00079	651	Gene3D	Transferase(Phosphotransferase) domain 1	352	449	-	-
	Gabi4281g00079	651	FunFam	Serine/threonine-protein kinase D6PK-like	266	351	-	-
	Gabi4281g00079	651	SMART	serkin_6	268	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4281g00079	651	PANTHER	FLIPPASE KINASE 1-RELATED	103	628	-	-
	Gabi4281g00079	651	SUPERFAMILY	Protein kinase-like (PK-like)	241	627	IPR011009	-
	Gabi4281g00079	651	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	389	401	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4281g00079	Gabi-Chr4281	735879	739768	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4281g00079	193	651	AGC Kinase Gene Family	AT5G47750	71.730	0.0	684

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Gabi4281g00079		Pkinase	2.7e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4281g00079	K08286		-	gmx:100802402	1020.76