Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00047 ATGAAAGATGTTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCAAGATGCTTAAAGCTTTATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTATAACAATGTCGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACTTTAGAACGCAATCCAAATGCATTCAGGCCAAAAATTGCAAGCAGCCCGCATGCAACACGTGAAAGCAGGGAGGAGGCTGGGGAAGTTTTAATATTGGGAAAGCACAATAAGGGGTGCCACTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGGCAGGCTTTGTTTCATGGAGATCATAATAACAACATGGCGTATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCGATAGGTTCCTCTGGTTATTCATCGCCACCAGTAACAAAAAAAAGAAAAGGTCAGGAACTCCTCTTTGGGCCAACTGTCAAAGATCCAATTGTTGGCAGGCTGGGACAACAGGCAAACAATGTCAGAAGTCCAGCACCTTCCTCATCCTTGTCTCCTATCCCAGGTGCTCGTGTTGGACCTGCAACATTAGGTCCTTCAAAATTTATGTATAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAGCTGTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACGCTTACAGACCAGAAAATTTTAATGGATAAGCATAGAGAAGATCAGACAGAAACTTCCCTTGCTGCTTCAACTCAAGAGCGATTACCAAGCCAAAAGGAAGCTGATGTTGAGAAAGCCATGGCTGACGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCTGATAATTCCAGTTCAGATGATGCTGATGTCCCAAAAGGGGGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGTGATGAGCAAGATACATTCATGACTGCTGCATCCCCTATTGGGTCAATGGCCCATGCTTGCAACAACACATCTTCGCAATTGCCTCACGGACAAGGGATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAACGAAACGAAGTGTTCTTCATTAGCCAGAAGTGAATTAGAGACTCAAGAGGACCCAATCATCATCGGCACCGGAAACGCCTGTACTGAGACAGTGCATAAGCAGGCAGCCACTAGTAATGGTGTTGCCAAACCTGTTGTTCCACCCACGGCAACAAGTAAGAGCACGATTACTTCAACATCTTTGGTCCCTGGTAGTCTTGGTCCTGAAAATGGGGAAACTAAGCTGAAAGTCGAAAAAAAGATATGA 1458 0.4348 MKDVTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHATRESREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHNNNMAYIQQAANAAITGAIGSSGYSSPPVTKKRKGQELLFGPTVKDPIVGRLGQQANNVRSPAPSSSLSPIPGARVGPATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKILMDKHREDQTETSLAASTQERLPSQKEADVEKAMADDCSSANQTDKISPDNSSSDDADVPKGGPMSPGTLALMCDEQDTFMTAASPIGSMAHACNNTSSQLPHGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELETQEDPIIIGTGNACTETVHKQAATSNGVAKPVVPPTATSKSTITSTSLVPGSLGPENGETKLKVEKKI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00047 485 PANTHER TESMIN/TSO1-RELATED 2 403 IPR028307 -
Gabi4281g00047 485 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 9 44 IPR005172 -
Gabi4281g00047 485 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 95 129 IPR005172 -
Gabi4281g00047 485 SMART CXC_2 7 47 IPR033467 -
Gabi4281g00047 485 SMART CXC_2 92 133 IPR033467 -
Gabi4281g00047 485 ProSiteProfiles CRC domain profile. 8 132 IPR005172 -
Gabi4281g00047 485 MobiDBLite consensus disorder prediction 448 470 - -
Gabi4281g00047 485 MobiDBLite consensus disorder prediction 443 476 - -
Gabi4281g00047 485 MobiDBLite consensus disorder prediction 271 339 - -
Gabi4281g00047 485 MobiDBLite consensus disorder prediction 199 220 - -
Gabi4281g00047 485 MobiDBLite consensus disorder prediction 305 323 - -
Gabi4281g00047 485 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00047 Gabi-Chr4281 458321 464281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00047 2 453 CPP Transcription Factor Family AT4G29000 61.957 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gabi4281g00047 TCR 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00047 - - gmx:100777698 780.015