Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00046 ATGGGTGAAGGTGAGGAAGGTGATTTCCCTTCCAAGAATGCATCATCCGATGCGGTTGCTCCTGCACATGCACCTGCACTGCCGCCCTCCGATGTTCCCGCCAAGAAGCTTGCCAGGCAGCTCGATTTCACCACCGGTATGCCGGCGGGTGCGCCTTTGTCAGAACGCCCTCAGTCGCAGCCGCCGCCACAACCACAGCAGCAGGTGGTTTTGACGCCGGTGCCTCCTCTTCCTTCCATGAGGGTTGGGAAACCAGAATCTCCAAAATCAAGATCAAGACCCAACTTTGAAATGAAAGATGTTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCAAGATGCTTAAAGCTTTATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGTTATAACAATGTCGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACTTTAGAACGCAATCCAAATGCATTCAGGCCAAAAATTGCAAGCAGCCCGCATGCAACACGTGAAAGCAGGGAGGAGGCTGGGGAAGTTTTAATATTGGGAAAGCACAATAAGGGGTGCCACTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGGCAGGCTTTGTTTCATGGAGATCATAATAACAACATGGCGTATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCGATAGGTTCCTCTGGTTATTCATCGCCACCAGTAACAAAAAAAAGAAAAGGTCAGGAACTCCTCTTTGGGCCAACTGTCAAAGATCCAATTGTTGGCAGGCTGGGACAACAGGCAAACAATGTCAGAAGTCCAGCACCTTCCTCATCCTTGTCTCCTATCCCAGGTGCTCGTGTTGGACCTGCAACATTAGGTCCTTCAAAATTTATGTATAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAGCTGTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACGCTTACAGACCAGAAAATTTTAATGGATAAGCATAGAGAAGATCAGACAGAAACTTCCCTTGCTGCTTCAACTCAAGAGCGATTACCAAGCCAAAAGGAAGCTGATGTTGAGAAAGCCATGGCTGACGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCTGATAATTCCAGTTCAGATGATGCTGATGTCCCAAAAGGGGGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGTGATGAGCAAGATACATTCATGACTGCTGCATCCCCTATTGGGTCAATGGCCCATGCTTGCAACAACACATCTTCGCAATTGCCTCACGGACAAGGGATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAACGAAACGAAGTGTTCTTCATTAGCCAGAAGTGAATTAGAGACTCAAGAGGACCCAATCATCATCGGCACCGGAAACGCCTGTACTGAGACAGTGCATAAGCAGGCAGCCACTAGTAATGGTGTTGCCAAACCTGTTGTTCCACCCACGGCAACAAGTAAGAGCACGATTACTTCAACATCTTTGGTCCCTGGTAGTCTTGGTCCTGAAAATGGGGAAACTAAGCTGAAAGTCGAAAAAAAGATATGA 1749 0.4574 MGEGEEGDFPSKNASSDAVAPAHAPALPPSDVPAKKLARQLDFTTGMPAGAPLSERPQSQPPPQPQQQVVLTPVPPLPSMRVGKPESPKSRSRPNFEMKDVTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHATRESREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHNNNMAYIQQAANAAITGAIGSSGYSSPPVTKKRKGQELLFGPTVKDPIVGRLGQQANNVRSPAPSSSLSPIPGARVGPATLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKILMDKHREDQTETSLAASTQERLPSQKEADVEKAMADDCSSANQTDKISPDNSSSDDADVPKGGPMSPGTLALMCDEQDTFMTAASPIGSMAHACNNTSSQLPHGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELETQEDPIIIGTGNACTETVHKQAATSNGVAKPVVPPTATSKSTITSTSLVPGSLGPENGETKLKVEKKI 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00046 582 PANTHER TESMIN/TSO1-RELATED 41 500 IPR028307 -
Gabi4281g00046 582 MobiDBLite consensus disorder prediction 402 420 - -
Gabi4281g00046 582 MobiDBLite consensus disorder prediction 296 317 - -
Gabi4281g00046 582 Coils Coil 139 159 - -
Gabi4281g00046 582 MobiDBLite consensus disorder prediction 545 567 - -
Gabi4281g00046 582 ProSiteProfiles CRC domain profile. 105 229 IPR005172 -
Gabi4281g00046 582 MobiDBLite consensus disorder prediction 540 573 - -
Gabi4281g00046 582 MobiDBLite consensus disorder prediction 368 436 - -
Gabi4281g00046 582 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 106 141 IPR005172 -
Gabi4281g00046 582 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 192 226 IPR005172 -
Gabi4281g00046 582 SMART CXC_2 189 230 IPR033467 -
Gabi4281g00046 582 SMART CXC_2 104 144 IPR033467 -
Gabi4281g00046 582 MobiDBLite consensus disorder prediction 55 82 - -
Gabi4281g00046 582 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00046 Gabi-Chr4281 457733 464281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00046 1 550 CPP Transcription Factor Family AT4G29000 54.167 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gabi4281g00046 TCR 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00046 - - gmx:100777698 836.639