Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00042 ATGACCACCGTAACCGCCACCACTCGAGCTCAGATCCTTCGCCACACCACGGCATTCATCTCGAGCGTCCTTTCCCAATCCGAACTCCGCCGCCACCTCATTGCCACTCTCCACCGCGAAACGCCGATTTCCAACCAAATCACCTTGAAACACCTGAACCTCGCCGCGGACAGTCTCGAAAGAGCAATCTCCTACTCCAGCCCCGCCATCCGCATCTCCTCCCTCACCATTGCCGAGAAGCTTCTCCTTCCTCTCCCTGAATACCCTGTCTCCTCCTTCCTTCTCTCCCTCATTCGCAACCTCTGCAACCGCCCAATCGAATCCGCCATAAGCCTCCTTCGAATCTTCCATTCGAAGCCTTCCCTAGCCCGATCCGAAATCGCGCCGGCTCTCTACGAAAACCTCTTTTCTCTCCACCTCTTCCCTGTTTTCCGGTGGTTCGATGAAGAGAGAACACGAATTTTGTCCTCAGCTTCTGCGAGTTTGAACCATGACAATACGATTGATGATAACTCGGTTTGGGACGAGTCCGTGGTCATGCCTAGCACGAAATCGTTGTCGAAGATGAGCGGAGATCAAGCCTCGAAGCTGAGGGAGTTGGAGAGAGAGTACCAAGAGGTTCTGAATGAGAATTGCAGAGTTTTTGCAGAGTACTTCAAAGAGGTTTTGGTGAATGAAAATGGAGACGCGTCAATTAGTCCACCATTGTTGATACTGAAGAGCGCCAGAGAAGGTGACAGTAGGGAGAACAGAGAGGAGGAGATACGAATGCCTGTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTATTGAATTTTTGAGCAGCAGTTCTAGCAGCAGATCCTCTCACGCATCATTTTATCCTCATAGAGTCTCTCCGAGAATCCTCAAACCCCATAAATCTTCAAAAAATTGGACAACACCAGTCTATTTACACTCGGCCTTTGAAACTGAGTTTTCTTTAAATGAGAATTTTCTTTGTTCTTCCTCAGACTCTGAAGCAGAAAACGAGGAAAAGGACAAAAATATGGCATTGTTGGAGCCTCAACAAAGCCAAACCCACGAACAAATGCAAACCATCTTCAAAGAATCCACGGGTTCCCCAGATTATCCTATGGCAGACTTCGATAACCCTCCCTATGGAAATGGGAAACATACACCTCCAAAGGACTTTGTCTGTCCAATAACAAGTAACATATTTGATGACCCAGTGACTCTTGAGACAGGTCAAACATATGAACGTAGAGCTATCGAGGAATGGTTCAATAGAGGGAATTCAACTTGTCCTATTACTCGCCAGAAGCTGCAAAATACCAAGCTACCTAAAACAAATTATGTGCTCAAACGCCTAATTGCTAGCTGGAAAGAACACAACACAAATTCGGTTCCTCCACCACGTGAGAGTCCATACGAAAATACCGAGGCAGTAGTGAAGTCAACAATGCCTTCAACTTCTCCTGATAGTGTTATAACACAAGCCACCTTGGATGGGATGATTAGTGAGTTACGCAATGCAATCAATAATCTGTATATGTCAGAGATTCTCGAGGAATCTGAAATGGCCGTGCTTCAAATTGAGAAGTTGTGGAGAAGAGTGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCGATAATTAATGGCTTTGTGGAGATCCTTTTCAATTCTGTTGAGCCCCAGGTGCTGCAAGCAGCAGTTTTCCTTCTGGCCGAGATGTGCTCTAGAGACAATGCTGTTATTCAGACCCTTACGCGTGTGGACACTGACGTGGAATGTATCATGGCTCTTTTCAAGAAAGGCTTGACAGAGGCTGTTGTGCTGTTGTATCTCCTAAAACCTTCCACTATAAGTCTTACAGAGATGGTCATGGTGGAGTCTCTGATAACAGTTTTCTATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTGGCACGGATTATTGGAAATGGAAACGGTGAAGAGATGAATGCATCTTCTGTTGTCAAGACTGTGCTCTCTGAAAAAGCAATTGGAAATATTATTGGCAGTTTGGGAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGACGGGACTTGCAGGAACACCATTGCTGATAAAGCAGAATTATCTCCTATTTTGGAAAGCTTCATGGGTGCAGCTGATGAGGAGCGTTTTAAGATTGTTCAATTTTTTTATGAGTTAGTCAAATTAAATAGGAGGACATTCAATGAACAAATCCTTCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTCCTTATTTATTTGCAGACAGCCCTTCAAGACCAATGTCCAGTCATGGCTGGCCTTTTACTCCAACTTGATCTTCTGCTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCTGCTTCTCAATTAGCAGCTGCTGATACAATCATGTCACTGCAAGGAAGGTTCAACTTCTCTGGAAAGCCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAGAAGTTCCAGATGTCTTGTAAAGGTGGATCAGATCAGCAACTTCTGCCCAGAAATTGAAATAACTATAGAAGAAGAGAAGGCGGCTGATGATTGGGAAAGAAAAATTGCATCTGTTCTGGCGAACCACGAGTTCGGTATACTTTTTGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAAATACGTTCAGCATGCTTTATATCAGCTACGTGGCTCATATACATGTTGACCATACTACCAGATACGGGGATTCAAGGAGCAGCCCGTGTCTGCTTGCTGAAGCAGTTCATAACTAAATTAAATTCTGCTAAGGACATAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCTTACGGGAACTAACTTCCTATACTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTACCTTGGCATCTGAAATGCTAGAAGTTCTGGTTGAAGAGAATGAATCTAAAGCAGATATTTGGATACATAAAGAGCTAATTCAAGAAGATTGCAGTGAGAATGGAGAAGTGCTATCTGTCATTTGCTTTAAGGATAAAACTTTTTCTGGCCATACAGATGGAACCATTAAGGTCTGGACATTGAAGGATAGCTCATTCCATCTGTTGCAAGAGATCCAAGAACATATTAAAGCTGTGACAAACTTGGCAATTTCTGAATCTGGTGACAGGCTATACAGTGGTTCACTTGACCGAACTGTAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTACAGGTGCATGACATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCATAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCATTCATTGAACGGAGAATCGAAGTTGTTAAATTCTAATAAATATGTGAAGTGCTTGGCTCATGTTCGTGGGAGATTATATTGTGGATGCCACGACAGTAGTGTTCAGGATATAGATTTGGCCACGGGAACAGTCAGCACCATTCAAAGTGGTTCTAAAAAATTACTTGGGAAAGCAAATCCTATTCATGCGTTGCAAATTCATGGTGATCTTATATATGCAGCTGGCTCTTCCTTGGATGGATTTGCTATAAAGATATGGAACAAATCCAATTACAGTATGGTTGGATCACTGCAAACTGGATCGGAAGTGCGGACTATGGCAGTGAGCTCAGAATTAATTTATTTGGGGTGCAAGGGAGGAGCTGTGGAAATTTGGGATAAGAAAAAGCACAATAGAGTTGACACGTTACAAATGGGTACGAATTGCAAGGTTATTTGCATGGCTCTAGACAGCCATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGGAATGAATTAA 4008 0.4341 MTTVTATTRAQILRHTTAFISSVLSQSELRRHLIATLHRETPISNQITLKHLNLAADSLERAISYSSPAIRISSLTIAEKLLLPLPEYPVSSFLLSLIRNLCNRPIESAISLLRIFHSKPSLARSEIAPALYENLFSLHLFPVFRWFDEERTRILSSASASLNHDNTIDDNSVWDESVVMPSTKSLSKMSGDQASKLRELEREYQEVLNENCRVFAEYFKEVLVNENGDASISPPLLILKSAREGDSRENREEEIRMPVLENGRYNPIWSEREASIEFLSSSSSSRSSHASFYPHRVSPRILKPHKSSKNWTTPVYLHSAFETEFSLNENFLCSSSDSEAENEEKDKNMALLEPQQSQTHEQMQTIFKESTGSPDYPMADFDNPPYGNGKHTPPKDFVCPITSNIFDDPVTLETGQTYERRAIEEWFNRGNSTCPITRQKLQNTKLPKTNYVLKRLIASWKEHNTNSVPPPRESPYENTEAVVKSTMPSTSPDSVITQATLDGMISELRNAINNLYMSEILEESEMAVLQIEKLWRRVNLGVDIHSMLSKPPIINGFVEILFNSVEPQVLQAAVFLLAEMCSRDNAVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTISLTEMVMVESLITVFYKKEEDLVKMCLKPKTAAVLLLARIIGNGNGEEMNASSVVKTVLSEKAIGNIIGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILESFMGAADEERFKIVQFFYELVKLNRRTFNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLLEPRKMSIYREEAIDTLISCLRNTDFPASQLAAADTIMSLQGRFNFSGKPLTREVLLKRAGIDRSSRCLVKVDQISNFCPEIEITIEEEKAADDWERKIASVLANHEFGILFEALADGMKSRNPEIRSACFISATWLIYMLTILPDTGIQGAARVCLLKQFITKLNSAKDIEDRILSMLALNSFLHFSDGLRELTSYTKDILKGLRELKRFSTLASEMLEVLVEENESKADIWIHKELIQEDCSENGEVLSVICFKDKTFSGHTDGTIKVWTLKDSSFHLLQEIQEHIKAVTNLAISESGDRLYSGSLDRTVKVWSIGKAAIHCVQVHDMKDQIHNLVVTNSIACFIPQGTGVKVHSLNGESKLLNSNKYVKCLAHVRGRLYCGCHDSSVQDIDLATGTVSTIQSGSKKLLGKANPIHALQIHGDLIYAAGSSLDGFAIKIWNKSNYSMVGSLQTGSEVRTMAVSSELIYLGCKGGAVEIWDKKKHNRVDTLQMGTNCKVICMALDSHEEILVIGTSDGQIQAWGMN 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00042 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1092 1125 IPR001680 GO:0005515
Gabi4281g00042 1335 Gene3D - 1136 1335 IPR015943 GO:0005515
Gabi4281g00042 1335 SUPERFAMILY WD40 repeat-like 1057 1334 IPR036322 GO:0005515
Gabi4281g00042 1335 Coils Coil 190 210 - -
Gabi4281g00042 1335 Pfam WD domain, G-beta repeat 1089 1124 IPR001680 GO:0005515
Gabi4281g00042 1335 SMART WD40_4 1215 1251 IPR001680 GO:0005515
Gabi4281g00042 1335 SMART WD40_4 1254 1290 IPR001680 GO:0005515
Gabi4281g00042 1335 SMART WD40_4 1085 1124 IPR001680 GO:0005515
Gabi4281g00042 1335 SMART WD40_4 1043 1080 IPR001680 GO:0005515
Gabi4281g00042 1335 SMART WD40_4 1293 1333 IPR001680 GO:0005515
Gabi4281g00042 1335 SMART Ubox_2 396 460 IPR003613 GO:0004842|GO:0016567
Gabi4281g00042 1335 Gene3D - 1021 1135 IPR015943 GO:0005515
Gabi4281g00042 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1301 1335 IPR001680 GO:0005515
Gabi4281g00042 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 469 IPR013083 -
Gabi4281g00042 1335 CDD RING-Ubox_PUB 394 446 IPR045210 -
Gabi4281g00042 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1092 1125 - -
Gabi4281g00042 1335 SUPERFAMILY RING/U-box 390 468 - -
Gabi4281g00042 1335 SUPERFAMILY ARM repeat 44 1000 IPR016024 -
Gabi4281g00042 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1301 1335 - -
Gabi4281g00042 1335 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1334 - -
Gabi4281g00042 1335 Pfam U-box domain 394 465 IPR003613 GO:0004842|GO:0016567
Gabi4281g00042 1335 ProSiteProfiles U-box domain profile. 392 467 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00042 Gabi-Chr4281 427997 440172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00042 394 480 U-box Gene Family AT5G42340 45.977 5.99e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00042 - - gmx:100808867 2081.6