Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00039 ATGTCTGTGCCATTGGAGCAGGGGTATGTTGGCATGACAGAGGTTCCTTCAATGGAAAGCTCTGACAAGTCTACAGAGAGGAACATTGGGTTGAACCTCAAAGCAACGGAACTGAGACTTGGCTTGCCAGGGTCCGAGTCACCAGAGAGAGATGGTGTGGAGGACAAGAATGGGTTCCCAGGCATGCTCAAGAGTTTGGTATCTGGGGCTAAGAGGGGTTTCTCGGACGCCATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGGAATGGTGGATCTGAAGTGGGTTTGTGTAAAGATGGTGGCTTGTTCTCTCCAAGGGGTGTTACTGCTCCCAAGTCTCTCTCTCTTGCCGCGCCTGACTGCACCAACCAGCAAACGGCTTTGGGTGTCTCTGTTGTCAAAGAAAGTGTCCCACACTCTCCAAAGCCATTGCATGAGAAGAAGCCTCAGATTTCTGCTCCCGCTGCAAAGGCGCAAGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAAAAGAATGATGCTGATGCTGATGCTGATGCTGAAGCCAAGTCTGAATGCCTTTACGTAAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTAGCACGTACAGGGAACTTTCTTCAGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTAGTTCTTATGCGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAGGCAATTGGGCTAGCACCTAGAGCTATGGAGAAGTGCAAAAGTCGCAACTAG 951 0.4774 MSVPLEQGYVGMTEVPSMESSDKSTERNIGLNLKATELRLGLPGSESPERDGVEDKNGFPGMLKSLVSGAKRGFSDAIDGGSGKWVLSGNGGSEVGLCKDGGLFSPRGVTAPKSLSLAAPDCTNQQTALGVSVVKESVPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMATQPQKNDADADADAEAKSECLYVKVSMEGAPYLRKVDLNSFSTYRELSSALEKMFSCFTISQCSSYAVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00039 316 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 31 303 IPR003311 GO:0005634|GO:0006355
Gabi4281g00039 316 Pfam AUX/IAA family 36 307 IPR033389 -
Gabi4281g00039 316 MobiDBLite consensus disorder prediction 39 58 - -
Gabi4281g00039 316 Gene3D - 190 309 - -
Gabi4281g00039 316 ProSiteProfiles PB1 domain profile. 196 298 IPR000270 GO:0005515
Gabi4281g00039 316 FunFam Auxin-responsive protein 191 308 - -
Gabi4281g00039 316 SUPERFAMILY CAD & PB1 domains 194 297 - -
Gabi4281g00039 316 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00039 Gabi-Chr4281 354445 357570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00039 199 306 B3 DNA Binding Superfamily AT4G23980 30.556 2.42e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gabi4281g00039 AUX_IAA 4.9e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00039 K14484 - qsa:O6P43_007901 473.396