Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00038 ATGTCTGTGCCATTGGAGCAGGGGTATGTTGGCATGACAGAGGTTCCTTCAATGGAAAGCTCTGACAAGTCTACAGAGAGGAACATTGGGTTGAACCTCAAAGCAACGGAACTGAGACTTGGCTTGCCAGGGTCCGAGTCACCAGAGAGAGATGGTGTGGAGGACAAGAATGGGTTCCCAGGCATGCTCAAGAGTTTGGTATCTGGGGCTAAGAGGGGTTTCTCGGACGCCATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGGAATGGTGGATCTGAAGTGGGTTTGTGTAAAGATGGTGGCTTGTTCTCTCCAAGGGGTGTTACTGCTCCCAAGTCTCTCTCTCTTGCCGCGCCTGACTGCACCAACCAGCAAACGGCTTTGGGTGTCTCTGTTGTCAAAGAAAGTGTCCCACACTCTCCAAAGCCATTGCATGAGAAGAAGCCTCAGATTTCTGCTCCCGCTGCAAAGGCGCAAGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAAAAGAATGATGCTGATGCTGATGCTGATGCTGAAGCCAAGTCTGAATGCCTTTACGTAAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTAGCACGTACAGGGAACTTTCTTCAGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAGGCAATTGGGCTAGCACCTAGAGCTATGGAGAAGTGCAAAAGTCGCAACTAG 873 0.488 MSVPLEQGYVGMTEVPSMESSDKSTERNIGLNLKATELRLGLPGSESPERDGVEDKNGFPGMLKSLVSGAKRGFSDAIDGGSGKWVLSGNGGSEVGLCKDGGLFSPRGVTAPKSLSLAAPDCTNQQTALGVSVVKESVPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMATQPQKNDADADADAEAKSECLYVKVSMEGAPYLRKVDLNSFSTYRELSSALEKMFSCFTIKYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00038 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 31 277 IPR003311 GO:0005634|GO:0006355
Gabi4281g00038 290 MobiDBLite consensus disorder prediction 39 58 - -
Gabi4281g00038 290 SUPERFAMILY CAD & PB1 domains 194 271 - -
Gabi4281g00038 290 Pfam AUX/IAA family 36 236 IPR033389 -
Gabi4281g00038 290 Pfam AUX/IAA family 237 281 IPR033389 -
Gabi4281g00038 290 Gene3D - 190 284 - -
Gabi4281g00038 290 MobiDBLite consensus disorder prediction 1 28 - -
Gabi4281g00038 290 ProSiteProfiles PB1 domain profile. 196 272 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00038 Gabi-Chr4281 354442 357570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00038 199 280 B3 DNA Binding Superfamily AT4G23980 36.782 6.76e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gabi4281g00038 AUX_IAA 7.5e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00038 K14484 - qsa:O6P43_007901 420.239