Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00030 ATGGAACGCATCTTAGGCGGCAAGTACAAACTAGGCCGCAAGATCGGAAGCGGATCCTTCGGTGAAATCTACCTCGCTACGCATATTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAACAGTAAAACAAAGCATCCGCAACTGCTTTATGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGTATTCCGAACATAAAATGGTCTGGTGTGGACGGGGAGGATAATGTGCTTGTTCTTGATTTGCTGGGGCCAAGCCTTGAGGATCTTTTTGTGTATTGTGGAAGAAAGTTTTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACATAGGGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAAGCCAACCAGGTTTATATAATAGATTTTGGGCTTGCCAAACGATATCGGGACTCTACAACCAACCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGTTATGCAAGCTGCAATACTCATCTTGGGATTGAGCAAAGCCGACGGGATGATTTGGAATCACTAGGATACGTACTTTTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTGAAGGCTGCAACAAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTATTTCGAGACCTATTTGCTCGAGAAGGTTATGAATTTGATTATGTTTTTGATTGGACCATTTTAAAGTACCAGCAAGCACAAAAGAATGTAGTGCAGCCCCCCTTATCTCCAGTTCCTGGAGCAAGTAACAATCGTGCAATTCCAATGGATGTTGACAACCATCAAGGGCATGTCAAAGAGCACGTTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCAGTGGGAAAAAATTTAAGTTCTGAAAATCCTCTTGATAAAAATATTTTTGGAGAAGCAAATATACCCTCTACTTCATATTCTCCTGCTGGTACTTCTAAAAGGAACTCCTTGAAGCCTGCCTTGTCTGCTGAAGCTTCTAATCCTGGACCTGGCCAAACCAGTAAAATTGGTCATTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTGCTAAATAA 1275 0.4141 MERILGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGVDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQAQKNVVQPPLSPVPGASNNRAIPMDVDNHQGHVKEHVRSGNATGSGVKIQFKSPVGKNLSSENPLDKNIFGEANIPSTSYSPAGTSKRNSLKPALSAEASNPGPGQTSKIGHSSSWMSSLQRISSAK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00030 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi4281g00030 424 CDD STKc_CK1_delta_epsilon 8 282 - -
Gabi4281g00030 424 MobiDBLite consensus disorder prediction 373 424 - -
Gabi4281g00030 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4281g00030 424 FunFam Casein kinase I isoform delta-like 1 340 - -
Gabi4281g00030 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gabi4281g00030 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4281g00030 424 Gene3D Transferase(Phosphotransferase) domain 1 1 328 - -
Gabi4281g00030 424 PANTHER CASEIN KINASE-RELATED 8 352 - -
Gabi4281g00030 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi4281g00030 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00030 Gabi-Chr4281 277183 284613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00030 9 234 EF-hand Containing Proteins AT4G23650 28.879 6.98e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi4281g00030 Pkinase 4.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00030 K08960 - gmx:100800342 804.283