Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4281g00003 ATGGAAGATCTCCCACCTGGTTTTCGCTTCTTCCCTACAGAAGAAGAGCTAGTTGGCTTCTACTTAAACAACAAGCTACAAGCCCAAAGAAACGCCATAGACAGAGTTATCCCAGTTATTGACATCAATGGTGTAGAGCCGTGGAACCTTCCAACACTAGCTGGGGAACTGTGTCGTGGGGACACAGAGCAATGGTTTTTCTTTTCACCCGCTCAAGAGAGGGAAGCCAAGGGAGGCAGACCCAACAGAACCACAGCTTGTGGGTATTGGAAGGCCACAGGTTCTCCTGGCTATGTTTACTCTTCTGACAACAAAGTAATTGGGTTGAAGAAAACCATGGTATTCTACAAAGGGAAAGCTCCTACCGGAAGAAAAACCAAATGGAAGATGAATGAATACAGAGCCATCCAAGTTTCTAACCAATCCACCACTGCCACCCCTCAGTTGAGGCGGGAATTCAGCTTGTGTCGGGTTTATGTCATATCTGGAAGCTTTCGAGCATTTGATCGACGCCCATTAGAGAAGGAAATTAGAGTAGAGTCGCGGGTTCAAGATATTGCACGTGCTCAGCAGCCTGCAAGGGTGGATGGAACAAGTTCATCTGAAAATTCACACTTAGGAGGACCCCACCATAGTGCTTATCCTCAAGAAGCTGGAGGGTCAAGTAGCACAAAATCAAATTTACATAATAACGAGGTCCAACTCCAAGAACCGTCATGGGAATGGGAATGGGAACAAGTCAAATGGCTCTAA 753 0.4635 MEDLPPGFRFFPTEEELVGFYLNNKLQAQRNAIDRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFSPAQEREAKGGRPNRTTACGYWKATGSPGYVYSSDNKVIGLKKTMVFYKGKAPTGRKTKWKMNEYRAIQVSNQSTTATPQLRREFSLCRVYVISGSFRAFDRRPLEKEIRVESRVQDIARAQQPARVDGTSSSENSHLGGPHHSAYPQEAGGSSSTKSNLHNNEVQLQEPSWEWEWEQVKWL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4281g00003 250 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 216 - -
Gabi4281g00003 250 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Gabi4281g00003 250 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Gabi4281g00003 250 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Gabi4281g00003 250 MobiDBLite consensus disorder prediction 193 207 - -
Gabi4281g00003 250 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Gabi4281g00003 250 MobiDBLite consensus disorder prediction 184 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4281g00003 Gabi-Chr4281 71551 73818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4281g00003 2 249 NAC Transcription Factor Family AT5G22380 55.200 7.35e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4281g00003 NAM 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4281g00003 - - cam:101497878 373.629