Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi427g00003 ATGAGTTCTCCATGTTCATCAGAGTTCTTGGTCAATTCAAGAAGCATAGTATCATTTCCTTCAAACTCTTCAGCAGGAGAAGACAACATGGCCAGTGATCAAAACAGGCCTCCTCATGCCTCCCCACCTTCATTTTTGACTCGTGTGGCCATGAGAATATCTAGAGCAAGATGGTTCACCTTCTTAAGAAGAGTATTCCATTACCAAAATGGACCAAGATCTAATCTTGGTTCTAACCCTTTCAATTCTAGCACATGGATGATGCTGGAGTTGATTGCTTTGATGGTTCAGGTCACTAGTACAACATTCACTTTGGCCATTTCAAAGAGCGAGAAGCCTATTTGGCCTATGAGGATATGGATAGTAGGTTATGATATTGGTTGTGTCCTTAATCTGTTGCTACTTTATGGCCGCTACCATCAACTTTATGTGACTCAAGGGGATGCTCTTACCCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACCAGGAGCTCACATTTGATGGATAAATGCCGGAGTTCACTAGAGCTTTTTTTTGCAATATGGTTTGTGATGGGCAATGTTTGGGCTTTTGACTCACGTTTTGGTTCTTTTCAACAAGCTCCAAAACTCCAAGTGCTCTGCATCATCCTCCTTGTTTGGAATGCAATTTGCTACTCTTTCCCTTTTCTACTATTTTTGCTATTGTGCTGTTGTGTGCCACTAATTAGCACCCTCCTTGGATACAACATGAACATGGGTTCCTCTGCTAGAGGTGCTTCTGATGATCAAATTTCACAACTTCCAAGTTGGAGATATAAAGTGCTTCATACCAACAACTTAGACCATGCCAATGACTCAGAAAGCAGTCAAAGATTGATCAATGAAGATCCAGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCCTGTTCCCATATGTTCCATCTAAAATGTGTGGATCAATGGTTAAGAATTATATCTTGCTGCCCTCTTTGCAAACAAGGATTGCAAAGGTAG 1026 0.4084 MSSPCSSEFLVNSRSIVSFPSNSSAGEDNMASDQNRPPHASPPSFLTRVAMRISRARWFTFLRRVFHYQNGPRSNLGSNPFNSSTWMMLELIALMVQVTSTTFTLAISKSEKPIWPMRIWIVGYDIGCVLNLLLLYGRYHQLYVTQGDALTLSDMEQQRNNEETRSSHLMDKCRSSLELFFAIWFVMGNVWAFDSRFGSFQQAPKLQVLCIILLVWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMGSSARGASDDQISQLPSWRYKVLHTNNLDHANDSESSQRLINEDPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQGLQR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi427g00003 341 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 15 339 - -
Gabi427g00003 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 340 IPR013083 -
Gabi427g00003 341 Pfam RING-like zinc finger 294 322 IPR001841 -
Gabi427g00003 341 MobiDBLite consensus disorder prediction 22 43 - -
Gabi427g00003 341 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Gabi427g00003 341 SUPERFAMILY RING/U-box 285 339 - -
Gabi427g00003 341 MobiDBLite consensus disorder prediction 22 41 - -
Gabi427g00003 341 SMART ring_2 295 335 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi427g00003 Gabi-Chr427 7555 10111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi427g00003 37 339 C3H Transcription Factor Family AT4G26580 68.197 3.07e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi427g00003 - - gmx:100818715 570.081