Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4279g00005 ATGAGTACCAACAATAGCACCATCTTCCCAACCTCACATGGGCAGATAAACACTTCTGAATTTATTGAGAGGGAAGAATCATCTCAGCCTATACCTCAAGGCAATGCAAGAAAGAGACATTATAGAGGTGTTAGACAGAGACCATGGGGAAAATGGGCAGCCGAAATAAGAGACCCTAAAAAGGCAGCTAGAGTGTGGCTTGGCACATTTGACACGGCAGAGGCTGCAGCTATTGCTTATGATGCTGCAGCATTGAAGTTCAAAGGAAACAAGGCCAAGCTCAATTTTCCTGAACTAGTTACTATGGAAGTGGATTCATCAACTAATAATGCTTCAGCTTCTACACATTCTATTCCTGCACCACCACTTGATGAGGTTCCACCACCGGTTGGTCAACCTCTTCCCTTATCTTATTCATCAGAGGAAGGATTTCCAAACCTAATGCAGTACGCACAAGTGCTTTGTAGTAGGGATGATGATGATCTTCAACGTGCTGCTTCAGGTCTTTACTATCATCATCACAATGAGCCTTAA 534 0.4345 MSTNNSTIFPTSHGQINTSEFIEREESSQPIPQGNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDAAALKFKGNKAKLNFPELVTMEVDSSTNNASASTHSIPAPPLDEVPPPVGQPLPLSYSSEEGFPNLMQYAQVLCSRDDDDLQRAASGLYYHHHNEP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4279g00005 177 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Gabi4279g00005 177 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Gabi4279g00005 177 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Gabi4279g00005 177 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Gabi4279g00005 177 Gene3D AP2/ERF domain 39 99 IPR036955 GO:0003700|GO:0006355
Gabi4279g00005 177 PANTHER DNA-BINDING DOMAIN 29 137 IPR044808 GO:0003700|GO:0009873
Gabi4279g00005 177 CDD AP2 40 99 IPR001471 GO:0003700|GO:0006355
Gabi4279g00005 177 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Gabi4279g00005 177 MobiDBLite consensus disorder prediction 107 126 - -
Gabi4279g00005 177 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Gabi4279g00005 177 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4279g00005 177 MobiDBLite consensus disorder prediction 1 44 - -
Gabi4279g00005 177 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4279g00005 Gabi-Chr4279 62298 64313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4279g00005 33 127 AP2-EREBP Transcription Factor Family AT5G61890 67.368 2.68e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4279g00005 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4279g00005 - - gmx:100796480 206.838