Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4276g00005 ATGGCTTCTGCAAAGAAAGACATGGATCGGATTAAAGGTCCATGGAGCCTCGAAGAGGACGAGGCTTTGAAGAAGCTGGTTCAGACTTACGGGCCTAGAAACTGGTCTCTGATCAGCAAATCAATTCCGGGACGATCCGGGAAGTCATGCCGGTTGCGGTGGTGCAACCAGCTGTCCCCGGAGGTAGAACACAGGCCTTTCACTACGGAGGAAGACGACGCTATCATCAGAGCGCATGCAAGGTTTGGTAACAAGTGGGCCACCATATCTCGCCTTCTCAATGGCCGCACCGACAACGCCATTAAGAACCACTGGAATTCCACCCTCAAGAGGAAATGCTCCGTCATCAACGATGCTCACACTGACCACCAGCCTCTCAAAAGATCCGCCAGTACCGGTGCGGGCACTGTCTCGGGTTTGTACTTGACTCCGAACAGCCCATCCGGATCCGATTTGAGCGATTCAAGTTTACACGTTATGTCTCCGACTCCGACGGAGGTTTTAAGACCGCTTGCGAGGAGTGTAACCCTGTTTCCCTCTCCTTCAACCCATCCTTTGGAAACTGCTTCTTCGGCCCCTGATCCACCCACGTCACTCAGCTTATCTCTGCCCGGATCCGATTCCTGCGGGTCTGGGCTTAACCAGGAGATCCAGCCAGCGCAGAGAAGTCAGGAGGGCGAGAAATTTAGTTACGAGAAGCAGTTGTCCAGCGCGGAGTTCTTGGCGTTGATGCAAGAGATGATTCGAATGGAAGTGACGAATTACATGTCTGGAGTTGAGCATAATGGTTTGTGTATGCAGACCGAAGACATTAGAAACGCTGTGGTCAAGCGTATGAGAATTGGCAGGGTCGAGTAG 858 0.5245 MASAKKDMDRIKGPWSLEEDEALKKLVQTYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTTEEDDAIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVINDAHTDHQPLKRSASTGAGTVSGLYLTPNSPSGSDLSDSSLHVMSPTPTEVLRPLARSVTLFPSPSTHPLETASSAPDPPTSLSLSLPGSDSCGSGLNQEIQPAQRSQEGEKFSYEKQLSSAEFLALMQEMIRMEVTNYMSGVEHNGLCMQTEDIRNAVVKRMRIGRVE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4276g00005 285 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Gabi4276g00005 285 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Gabi4276g00005 285 MobiDBLite consensus disorder prediction 178 214 - -
Gabi4276g00005 285 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Gabi4276g00005 285 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Gabi4276g00005 285 MobiDBLite consensus disorder prediction 124 161 - -
Gabi4276g00005 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Gabi4276g00005 285 PANTHER MYB PROTEIN-RELATED 12 182 - -
Gabi4276g00005 285 FunFam Transcription factor MYB44 66 112 - -
Gabi4276g00005 285 Gene3D - 65 132 - -
Gabi4276g00005 285 CDD SANT 14 56 IPR001005 -
Gabi4276g00005 285 MobiDBLite consensus disorder prediction 126 161 - -
Gabi4276g00005 285 Gene3D - 11 63 - -
Gabi4276g00005 285 FunFam MYB transcription factor 12 63 - -
Gabi4276g00005 285 CDD SANT 66 109 IPR001005 -
Gabi4276g00005 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Gabi4276g00005 285 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Gabi4276g00005 285 SMART sant 11 60 IPR001005 -
Gabi4276g00005 285 SMART sant 63 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4276g00005 Gabi-Chr4276 66884 68120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4276g00005 5 285 MYB Transcription Factor Family AT4G37260 47.734 2.71e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4276g00005 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4276g00005 K09422 - cpap:110818856 357.451