Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4276g00004 ATGCACATCCTAGTCTTCCTCTTGGTCCTCTTGATTTCCCCATCTTCATTTGCAGCGACGGATACACTTCCAGAAGGCTCATCTCTTTCGGTTGAGAAACCAAGTGACACCCTGGTTTCAGCCAATGGTGACTTCTCGGCAGGTTTCTTCCAAGTGGGGGATAACGCTTTCTGCTTTTCCGTATGGTTCACAAGGTCCAAAGAACCCACCGTTATTTGGATGGCGAATCGAGACGAACCAGTCAACGGGAAATACTCAGAATTATCACTTTGGAGAAATGGCAATCTCGTTTTGTTCGATGCAGGAAGAACCACTATTTGGAGCACCGCCACCGTCTTCTCCCAATCGCAGCTGAAGCTCATGGACAACGGAAACCTCATCCTTGGCACTTTACAAGGCACTGTCCGTTGGCAAAGCTTTGACTCTCCCACAGACACCATTCTTCCTGGCCAAGCAGTTACAGAGCAAGCAAGCTTGGTTTCATCAAGAAGCACAACGAACTATTCCTCCGGTTTCTATAAACTTTATTTTGACAACGATAATGTTCTGCGCTTTCTTTTCAAAGGTTCTACACTATCCAGCGTGTACTGGCCAGAACCGTGGAAACTTCCGGTTGATGCACAGAGATCCACCTACAATGTAACAAAAATCGCTGTCCTAGATTCATTTGGCCATTTCACATCCTCTGATGGGTTCCAAATCTTTTCCACCGATTATGGCATGAAATTGTATAGACGACTCACGATGGATGCTGACGGTAACTTGCGTCTCTACAGCTTCAATGAGAACCACAAGATGTGGGAGGTATCATGGCAAGCCATTTCACAACCATGTACTGTTCATGGTCTTTGTGGAGCTAACAGCATGTGCACTTATGATCCCGTTTATGGCAGGACTTGCTATTGCCTGCAAGGATTTAAGGTTAAGAATCCAAACGATTGGACACTGGGGTGTGAGCCTGAATTTAACCCTGCTGATCTCTCTTGCAATCGAAGTGAATCTTTAGGTTTCCTCCATATTCTAAACACGGAATTATACGGCTATGATTGGAACGTAACAGCCGTTTCAAGCTTGAAGGAATGCCAAAATTTATGCTTGGAACTTTGTGATAACTGCAAAGGCATCCAACTCAAATTCAACGGCATCGGTACTTATAATTGTTACCCAAAAACAATACTGCTCAACGGTAGGGATTCGCCCAATTTTGATGGAGAGACCTATCTAAAGTTGCCAAAAGCGACTCTGCTCTCTTCCAACAAGCCTTTTAATAAGCATGCACCGTTGAAGTGTTCGGTTGGTTTGTCTCAACGACTGAATAGATTTTATCAGAAACCTAGAAGAAACTCCACATTGAATTTCTTGGTTTGGTTCGCTTGCGGGATTGGGGCTTTTGAGATGTCCATGATTTTCCTTGTGTGGTTCTTCTTGTTTAGAACCAACAAGCGACCTGATTTAGAAGATCAACAGAGGCACCTTCTTTCTGCTACAGGATTTCAAAGGTTCACGTATGCAGAGCTCAAAAGTGCGTCAAAGGGATTCAGTGAGGAGATTGGGCGAGGAGCGGGAGGGGTTGTGTACAAAGGGACATTATATGATCACCGTGTTGCTGCGATCAAACGTCTGGGTGAAGCTAATCAAGGAGAAGCTGAATTCCTAGCAGAAATAAGCACCATTGGCATGTTGAACCACATGAATTTGATTGATATGTGGGGATACTGTGTCGACGGGAAGCACAGGCTCTTGGTGTATGAGTTTATGGAGCATGGATCTTTAGCAGAGAATCTCTATTCCAATACCCTTGATTGGAAGAAGAGGTTTAATATAGCTGTAGGTACAGCGAAAGGTCTGGCTTATTTACACGAAGAGTGCTTGGAATGGGTTTTACATTGCGATGTGAAGCCTCAAAACATTCTCCTCGACTCTGATTTTCAACCCAAGGTAGCTGATTTTGGCTTGTCAAAACTTTTAAATAGAGATGAGCGTGCAGGCAGTTCTGCTTTTTCAAGAATAAGAGGAACTCGGGGTTACATGGCTCCCGAGTGGGTTTACAATCTTCGCATTACTTCTAAAGTAGACGTTTATAGCTATGGGGTTGTTGTGTTGGAAATGGTAACTGGAAAGAGCCCTATGGAAATCCACAGCCTTGAGAACAGTAACGGCATAGAGCAGCGTCGGTTACTGACGTGGGTGACTGACAAGATAAACAGTGCACCCACAAGCAAGTTTTGGATTGAGGAGATTGTAGATCCCAACTTGGAGGGCCGATACGTCATTTCGCAGGTTGAGATTTTGGTTAAAGTGGCTTTGCAATGTGTGAAAGATGACATGAATGAAAGACCGTCCATGAGCCAAGTGGCTGAGATGCTTCAGTCCCATGATAATGATAGAGTCTCCCCTCGTTAG 2403 0.4453 MHILVFLLVLLISPSSFAATDTLPEGSSLSVEKPSDTLVSANGDFSAGFFQVGDNAFCFSVWFTRSKEPTVIWMANRDEPVNGKYSELSLWRNGNLVLFDAGRTTIWSTATVFSQSQLKLMDNGNLILGTLQGTVRWQSFDSPTDTILPGQAVTEQASLVSSRSTTNYSSGFYKLYFDNDNVLRFLFKGSTLSSVYWPEPWKLPVDAQRSTYNVTKIAVLDSFGHFTSSDGFQIFSTDYGMKLYRRLTMDADGNLRLYSFNENHKMWEVSWQAISQPCTVHGLCGANSMCTYDPVYGRTCYCLQGFKVKNPNDWTLGCEPEFNPADLSCNRSESLGFLHILNTELYGYDWNVTAVSSLKECQNLCLELCDNCKGIQLKFNGIGTYNCYPKTILLNGRDSPNFDGETYLKLPKATLLSSNKPFNKHAPLKCSVGLSQRLNRFYQKPRRNSTLNFLVWFACGIGAFEMSMIFLVWFFLFRTNKRPDLEDQQRHLLSATGFQRFTYAELKSASKGFSEEIGRGAGGVVYKGTLYDHRVAAIKRLGEANQGEAEFLAEISTIGMLNHMNLIDMWGYCVDGKHRLLVYEFMEHGSLAENLYSNTLDWKKRFNIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSDFQPKVADFGLSKLLNRDERAGSSAFSRIRGTRGYMAPEWVYNLRITSKVDVYSYGVVVLEMVTGKSPMEIHSLENSNGIEQRRLLTWVTDKINSAPTSKFWIEEIVDPNLEGRYVISQVEILVKVALQCVKDDMNERPSMSQVAEMLQSHDNDRVSPR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4276g00004 800 ProSiteProfiles Protein kinase domain profile. 511 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00004 800 Pfam S-locus glycoprotein domain 240 309 IPR000858 GO:0048544
Gabi4276g00004 800 FunFam Serine/threonine-protein kinase 586 797 - -
Gabi4276g00004 800 PIRSF SRK 1 800 IPR024171 GO:0004674
Gabi4276g00004 800 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 198 IPR036426 -
Gabi4276g00004 800 Pfam D-mannose binding lectin 70 156 IPR001480 -
Gabi4276g00004 800 Gene3D - 16 142 IPR036426 -
Gabi4276g00004 800 CDD STKc_IRAK 517 790 - -
Gabi4276g00004 800 PANTHER OS07G0415500 PROTEIN 6 796 - -
Gabi4276g00004 800 SMART blect_4 29 143 IPR001480 -
Gabi4276g00004 800 ProSiteProfiles Bulb-type lectin domain profile. 14 141 IPR001480 -
Gabi4276g00004 800 SMART serkin_6 511 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00004 800 ProSiteProfiles PAN/Apple domain profile. 329 411 IPR003609 -
Gabi4276g00004 800 MobiDBLite consensus disorder prediction 780 800 - -
Gabi4276g00004 800 Pfam Protein kinase domain 514 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00004 800 CDD PAN_AP_plant 326 411 - -
Gabi4276g00004 800 FunFam S-receptor-like serine/threonine-protein kinase 480 585 - -
Gabi4276g00004 800 CDD B_lectin 37 143 IPR001480 -
Gabi4276g00004 800 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Gabi4276g00004 800 Gene3D Transferase(Phosphotransferase) domain 1 586 798 - -
Gabi4276g00004 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Gabi4276g00004 800 Gene3D Phosphorylase Kinase; domain 1 477 585 - -
Gabi4276g00004 800 SUPERFAMILY Protein kinase-like (PK-like) 489 790 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4276g00004 Gabi-Chr4276 58716 61121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4276g00004 442 789 Receptor kinase-like Gene Family AT3G58690 37.534 3.54e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4276g00004 Pkinase 4.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4276g00004 - - gmx:100816469 1286.17