Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4276g00003 ATGGCAAACCGCGACCAACCGGTAAACGGTAAGCGCTCAACACTCTCCCTTCTTAAAACCGGTAATCTTCTTCTAGAAGATGCCGGTGAATTCGTCGTTTGGTCCACGCAAACTTCTTCACCCTCATCCGTGGAGTTGGTTCTTAGCAACACTGGTAACCTTGTTCTACGAGAGACGGGAACTAGCAGAAGCGTCACTTTGTGGCAGAGTTTTGATTTCCCAACAGATACTCTTCTTCCTCAACAACAACTCACCAGGTTTACAAAGCTCATCTCGTCAAGAAGTGATAGTAACCATTCCTCAGGTTTTTATAATATGTTTTTTGACAACGACAATGTTATTAGCCTTCTTTATAATGGCCCTGAAATTTCTAGTATTTATTGGCCGGCTCCTTGGTTGGTGAGCTGGGAAGCAGGAAGGAGTACTTACAATGCAAGTAGGATTGCAGTGCTTGATTCTTTTGGAAATTTCAGTTCATCAGATAATCTTGGTTTCACAACATCTGATTATGGTTCTGTACTTCAAAGAAGATTAACCCTTGATTATGATGGCAATGTCCGAGTCTACAGCCGAAAAAATGGGACAGAGGAGTGGTATGTGTCTTGGCAAGCCATATCAAATCCTTGTACAATTCATGGCATATGTGGTGCTAACAGCACGTGTGCCTATGATCCTGCAGGTTCCGGAAGGAAATGTTCTTGCCTTCCAGGTTATAAACCCACGAATGGTAGTGATTGGTCTCAGGGATGTGAACCCATATACAATTCTCCTTGCAACAAAAGTGATACTGGGTCTTACTTTCTTCGCGTGCCCAATTCTGATTTCTATGGTTATGATTCTGGATTTTTCCCAAATTACACTTTTCACGAATGCTTGAAGCTTTGTCTGCAATCCTGCAACTGCCTAGGCATCCAGTATAAATTTAATACCAGCGGCGGACATTTTAATTGTTACCCAAAAACTATGTTATTAAATGGGTATCGTTCACCAGATTTCCTTGGAGATATCTACTTGAAAGTGCCTGCAGGTTTCCTACAGTTCACTCTGCCTGAAGCATTGTTTGAAGAATCAAATAATACCCTTTGTGATTCCAGCGGAACAATATTGCTAGATAGAACGTATAGAACAAGCTACGAAGATGGAAAACTGAGGCTCCTGCTATGGTTTGCTAGCGCTTCAGGAGTGCTGGAGATGATGTGTATCCTTTTGGTTTGTTGTTTCTTGGTAAGAACTGGAGGACAGTCTGATGCATACGCACAAGGGTACCTTCCCGTAGGCACTGGGTTTAGAAAATATGGTTACTCTGAGCTGAAAAAGGCATCTAGAGGTTTTAGCGAGGAGATTGGAAGAGGCGCTGCAGGGATTGTGTACAAAGGTGAATTGTCAGATCTTCGAGTTGTGGCAATAAAGAGACTTAGAGAAGCTTATCAAGGAGAGGATGAATTTCTTGATGAAATAAGCATCATTGGAAGGCTTAATCACATGAACTTGATCAAAATGTGGGGATATTGCGCGGAGGGCAAGCACAGGCTATTGGTATATGAGTACGTGGAGAAGGGTTCATTGGCTGAAAACCTTGTGTCCAGTGCCCTGGATTTCAATAGAAGGTTTAGCATTGCATTGGGTATGGCAAGAGGTCTAGCCTATTTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATGTAAAGCCTCAAAACATACTTCTGGATTCTAGTTATAAACCTAAGGTAGCAGATTTTGGCCTTTCCAAGCTACTAAACAGAAATGACCCTGACAATTCAAATTTCTCACGCATAAGAGGCACCAGAGGTTACATGGCTCCTGAGTGGGTTTTTAATTTGTCAATCACCTCCAAAGTAGATGTCTATAGCTACGGAATTGTGGTCCTTGAGATGCTGACTGGAAAGAGCCCCACAATGGGAGTTCAAGGAGTTGATGGTACAGAAGCGAAGCAGCACTGGCGGCTGGTTATATGGGTGAGAGAGAAAAGGGCTAATGCATCCTCAAAGGCCTCGTGGTTGAAGCAGATAGTACACCCTTTTATAGGATGGAAATTTAACTCGGATAGATTGGAAATTTTAGTTGAAGTCGCTTTACAATGTGTAGAAGAAGATAAAGATGCAAGGCCAACCATGAGGCAAGTTGTGGAGATGCTACAAAGGCATGAAAATGATTGA 2181 0.426 MANRDQPVNGKRSTLSLLKTGNLLLEDAGEFVVWSTQTSSPSSVELVLSNTGNLVLRETGTSRSVTLWQSFDFPTDTLLPQQQLTRFTKLISSRSDSNHSSGFYNMFFDNDNVISLLYNGPEISSIYWPAPWLVSWEAGRSTYNASRIAVLDSFGNFSSSDNLGFTTSDYGSVLQRRLTLDYDGNVRVYSRKNGTEEWYVSWQAISNPCTIHGICGANSTCAYDPAGSGRKCSCLPGYKPTNGSDWSQGCEPIYNSPCNKSDTGSYFLRVPNSDFYGYDSGFFPNYTFHECLKLCLQSCNCLGIQYKFNTSGGHFNCYPKTMLLNGYRSPDFLGDIYLKVPAGFLQFTLPEALFEESNNTLCDSSGTILLDRTYRTSYEDGKLRLLLWFASASGVLEMMCILLVCCFLVRTGGQSDAYAQGYLPVGTGFRKYGYSELKKASRGFSEEIGRGAAGIVYKGELSDLRVVAIKRLREAYQGEDEFLDEISIIGRLNHMNLIKMWGYCAEGKHRLLVYEYVEKGSLAENLVSSALDFNRRFSIALGMARGLAYLHEECLEWILHCDVKPQNILLDSSYKPKVADFGLSKLLNRNDPDNSNFSRIRGTRGYMAPEWVFNLSITSKVDVYSYGIVVLEMLTGKSPTMGVQGVDGTEAKQHWRLVIWVREKRANASSKASWLKQIVHPFIGWKFNSDRLEILVEVALQCVEEDKDARPTMRQVVEMLQRHEND 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4276g00003 726 Pfam S-locus glycoprotein domain 159 241 IPR000858 GO:0048544
Gabi4276g00003 726 FunFam Serine/threonine-protein kinase 75 202 - -
Gabi4276g00003 726 FunFam S-receptor-like serine/threonine-protein kinase 413 516 - -
Gabi4276g00003 726 ProSiteProfiles EGF-like domain profile. 205 244 IPR000742 -
Gabi4276g00003 726 ProSiteProfiles Protein kinase domain profile. 442 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00003 726 SMART serkin_6 442 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00003 726 CDD STKc_IRAK 448 722 - -
Gabi4276g00003 726 Gene3D Transferase(Phosphotransferase) domain 1 517 726 - -
Gabi4276g00003 726 Gene3D - 73 200 IPR036426 -
Gabi4276g00003 726 Gene3D Phosphorylase Kinase; domain 1 418 516 - -
Gabi4276g00003 726 Pfam Protein kinase domain 445 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00003 726 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 128 IPR036426 -
Gabi4276g00003 726 Gene3D - 3 70 IPR036426 -
Gabi4276g00003 726 ProSiteProfiles Bulb-type lectin domain profile. 1 69 IPR001480 -
Gabi4276g00003 726 ProSiteProfiles PAN/Apple domain profile. 258 341 IPR003609 -
Gabi4276g00003 726 SUPERFAMILY Protein kinase-like (PK-like) 429 721 IPR011009 -
Gabi4276g00003 726 CDD PAN_AP_plant 255 341 - -
Gabi4276g00003 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Gabi4276g00003 726 PIRSF SRK 1 726 IPR024171 GO:0004674
Gabi4276g00003 726 PANTHER OS07G0415500 PROTEIN 1 722 - -
Gabi4276g00003 726 Pfam D-mannose binding lectin 2 86 IPR001480 -
Gabi4276g00003 726 FunFam Putative receptor-like protein kinase 517 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4276g00003 Gabi-Chr4276 48778 50973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4276g00003 432 720 Trihelix Transcription Factor Family AT5G38560 40.678 4.96e-61 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4276g00003 Pkinase 5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4276g00003 - - qsa:O6P43_016023 935.636