Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4276g00002 ATGCTCTCACCAAATGGCATGTTCTCTGCTGGCTTCTATGCTGTTGGTGACAATGCCTATTCCTTTGCCATTTGGTTTTCCGAATCCAATGGCCAAACCCAAAACGCTACGGTGGTATGGATGGCAAACCGTGACCAGGCAGTCAACGGGATGCGCTCAAAGCTTTCCCTACTTGACAAAGGTAATCTTGCCTTAACGGATGCAGATGGATCCCTCGTTTGGTCCACAAATACTGTTTCATTGTCCCCCGTACATCTGTCTCTTAACGATGTTGGTAACCTTGTTCTGCGTGTGGGGGAGGGTGTCATCCTGTGGCAAAGCTTTGATTTCCCTACAGATACACTTGTTCCACAACAAGTGTTCACCAGATATGCAAAACTAGTCTCTTCAAGAAGTGAGACTAACAAGTCCTCGGGTTTCTATTCACTGTTTTTCGACAGTGATAATATTCTTCGTCTTCTCTATGATGGTCCTGAAGCTTCAGGCCTTTACTGGCCAGATCCTTGGCTGCTCGCTTGGCAGGCTAATAGGGCTGGTTACAACAACAGTAGAGTTGCAGCGATGGATAGCCTTGGCAATTTTAGTTCATCAGATGATTTCACTTTTATGACATCTGATTATGGGACCGTGATGCAAAGAAGAGTCACTGTTGATTATGATGGAAATATCCGTGCTTACAGTCGGAGACACGGAGGACACAAATGGACTATTACATGGCAAGCCAAATCAAGGCCATGCAGGATTCATGGCATTTGTGGCCCTAACAGTTTGTGCTCTTATAGTACTAATTCTGGTATCAAATGCACTTGTCTTCCAGGCTATAAGATGAAGAATGATGGCGATTGGGCATATGGGTGTGTGCCAAAATTCTCTTTATCTTGCAACAAAACCGAGTCTAGCTTTTTAGTTATAAGCAACGTGGAGTTATATGGCTATGACTACGGGATCATGGCAAATTACACGCTCGATCAGTGTAAGGAGCTATGCTTGCAATTGTGCGGCTGTAAAGGCATCCAGTATAGCAATGAACTTAATGCTCTTGGCACTTATACCTGCTACCCGAAGTTGCAGTTGCAGAATGCGTATCGTACACCATATTATAGGGCTTATCTGTACCTGAAACTGCCAGCGAACAGTTCGTATTCTCATGACGAGTCCATAGATGAGTACAGTCTTTCTTGTTCCCCGAATTCAAAAGTAACACAACTCGAAAGAGCATATGACAAAGGCCATGGAAACAGATATGTTAAGTTCATGGTCTGGTTTGCAGCAGGAGTTGGGGGACTTGAAATTTTGTGCATATTTCTGGTTTGGTATTTTTTGGGAAGAACCAGGCAACAATACTTTGGTTCAGATGCACGAGTTTATGATCTGGCTTTAACTGGTTTTAGAAAATTCAGTTATTCGGAGCTGAAACATGCCACCAAAGGTTTTAGTGAAGAGATCGGGAGGGGTGGAGGAGGGACTGTATACAAAGGTGTATTGTGGGATGAACGTGTTGCAGCAATAAAGAGACTGAAGGAAGCTAATCAAGGAGAAGAAGATTTCCTCGCGGAAGTAAGCATCATCGGAAGGCTTAACCACATGAACTTGATTGAGATGTGGGGATATTGTGCTGATGGAAAACACAGGCTACTTGTGTACGAGTACTTGGAGCATGGATCTCTAGCTGAAAATATCAAATCTAATCGATTGGATTGGACAAAAAGGTTTGACATAGCCTTAGGCACGGCGAAAGGTCTTGCTTATATCCATGAGGAGTGCTTGGAGTGGATTCTGCACTGCGATGTAAAGCCCCACAACATACTTCTTGATTCTAATTATCATCCAAAGGTTGCAGATTTTGGGCTGTCAAAGCTGCGGAGCAGAAATGATACTAAATACTCTAGTTTTTCAAGGATACGAGGAACCAGAGGTTACATGGCTCCTGAGTGGGTTTTTAATCAACCAATCACCTCCAAAGTTGATGTGTATAGCTATGGAATTGTTATCTTGGAAATGATCACAGGAATGAGTGCAACAATGGATATTTATGCCACTAGTGGAGTACAGAAGCAGCATCTTAGCCTGGTCGCGTGGCTGAGAGAGAAACAGAATAATGGTTCTTCGTGGGTTGATGAAATCTTAGACCGCACCATAAGAGGAGGTTATGAGGAAAGTAAGATGGAAGCTTTGGCCAGAGTGGCTCTGCAATGTGTGGAGGAAGAGAGGGACAAGAGGCCCACCATGAGTCAAGTTGTAGAGATGCTTCAGAAATGTAGCCGCGAAGACGACAATTAG 2280 0.4386 MLSPNGMFSAGFYAVGDNAYSFAIWFSESNGQTQNATVVWMANRDQAVNGMRSKLSLLDKGNLALTDADGSLVWSTNTVSLSPVHLSLNDVGNLVLRVGEGVILWQSFDFPTDTLVPQQVFTRYAKLVSSRSETNKSSGFYSLFFDSDNILRLLYDGPEASGLYWPDPWLLAWQANRAGYNNSRVAAMDSLGNFSSSDDFTFMTSDYGTVMQRRVTVDYDGNIRAYSRRHGGHKWTITWQAKSRPCRIHGICGPNSLCSYSTNSGIKCTCLPGYKMKNDGDWAYGCVPKFSLSCNKTESSFLVISNVELYGYDYGIMANYTLDQCKELCLQLCGCKGIQYSNELNALGTYTCYPKLQLQNAYRTPYYRAYLYLKLPANSSYSHDESIDEYSLSCSPNSKVTQLERAYDKGHGNRYVKFMVWFAAGVGGLEILCIFLVWYFLGRTRQQYFGSDARVYDLALTGFRKFSYSELKHATKGFSEEIGRGGGGTVYKGVLWDERVAAIKRLKEANQGEEDFLAEVSIIGRLNHMNLIEMWGYCADGKHRLLVYEYLEHGSLAENIKSNRLDWTKRFDIALGTAKGLAYIHEECLEWILHCDVKPHNILLDSNYHPKVADFGLSKLRSRNDTKYSSFSRIRGTRGYMAPEWVFNQPITSKVDVYSYGIVILEMITGMSATMDIYATSGVQKQHLSLVAWLREKQNNGSSWVDEILDRTIRGGYEESKMEALARVALQCVEEERDKRPTMSQVVEMLQKCSREDDN 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4276g00002 759 Gene3D - 1 110 IPR036426 -
Gabi4276g00002 759 Pfam S-locus glycoprotein domain 199 277 IPR000858 GO:0048544
Gabi4276g00002 759 Gene3D Phosphorylase Kinase; domain 1 445 550 - -
Gabi4276g00002 759 PANTHER OS07G0415500 PROTEIN 2 752 - -
Gabi4276g00002 759 SUPERFAMILY Protein kinase-like (PK-like) 459 751 IPR011009 -
Gabi4276g00002 759 SMART serkin_6 476 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00002 759 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 551 758 - -
Gabi4276g00002 759 ProSiteProfiles Protein kinase domain profile. 476 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00002 759 PIRSF SRK 1 759 IPR024171 GO:0004674
Gabi4276g00002 759 Pfam D-mannose binding lectin 37 123 IPR001480 -
Gabi4276g00002 759 Pfam Protein kinase domain 479 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00002 759 Gene3D Transferase(Phosphotransferase) domain 1 551 759 - -
Gabi4276g00002 759 ProSitePatterns Protein kinases ATP-binding region signature. 482 504 IPR017441 GO:0005524
Gabi4276g00002 759 CDD STKc_IRAK 482 752 - -
Gabi4276g00002 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Gabi4276g00002 759 FunFam S-receptor-like serine/threonine-protein kinase 446 550 - -
Gabi4276g00002 759 SMART blect_4 2 111 IPR001480 -
Gabi4276g00002 759 CDD PAN_AP_plant 290 376 - -
Gabi4276g00002 759 SUPERFAMILY alpha-D-mannose-specific plant lectins 23 167 IPR036426 -
Gabi4276g00002 759 ProSiteProfiles Bulb-type lectin domain profile. 1 109 IPR001480 -
Gabi4276g00002 759 CDD B_lectin 2 111 IPR001480 -
Gabi4276g00002 759 ProSiteProfiles PAN/Apple domain profile. 294 394 IPR003609 -
Gabi4276g00002 759 SMART ntp_6 296 375 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4276g00002 Gabi-Chr4276 38039 40378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4276g00002 450 755 Receptor kinase-like Gene Family AT3G58690 40.252 2.60e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4276g00002 Pkinase 9.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4276g00002 - - gmx:100792388 1158.28