Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4276g00001 ATGGGTATTATATCGACCTTATGGTTGTTCCTCTTCCATTTCGTTTTGTGTCTACAGCTTTCATCTTCAGCTGTGGATACTATCAGTCAAGGTTCATCCCTCTCAGTGGAGAAACCAGAAGATGTCATGCTCTCACCAAATGGCATGTTCTCTGCTGGCTTCTACGCTGTTGGTGACAATGCCTATTCCTTTGCCATTTGGTTTTCCGAATCCAATGGCCAAACCCAAAACGCTACGGCGGTATGGATGGCAAACCGTGACCAGCCCGTCAACGGGAAGCGTTCAAAGCTTTCCCTACTTGACAATGGTAATCTCGCCTTAACGGATGCAGATGGATCCCTCGTTTGGTCCACAAATACTGTTTCATTGTCCTCCGTACATCTGTCTCTTAACGATGTTGGTAACCTTGTTCTGCGTGTGGGTGATGGTGTCATCCTGTGGCAAAGCTTTGATTTCCCTACAGATACACTTGTTCCACAACAAGTGTTCACCAGACATGCAAAACTAGTCTCTTCAAGAAGTGACACTAACAAGTCCTCGGGTTTCTATTCACTGTTTTTCGACAGTGATAATATTCTTCGTCTTCTCTATGATGGTCCTGAAGTTTCAGGCCTTTACTGGCCAGATCCTTGGCTGGCCCCTTGGCAGGCTAACAGAGAAAGTTACAACAACAGTAGAGTTGCAGTGCTGGATACCCTTGGCAATTTCAGTTCATCAGATGAACTCACTTTTATGACATCTGATTATGGGACCGTGATCCAAAGAAGATTCACTGTTGATTATGATGGAAATATCCGTGTTTACAGTCGGAGACACGGAGGAGAGAAATGGTCTACTACATGGCAAGCGACGTCAAGGCCATGCAGGATTCATGGCATTTGTGGCCCCAACAGTTTGTGCTTATATAATGTTGTTTCTGGCATCAAATGCTCCTGTCTTCCAGGCTATAAGATGACGAATGATGGGGATTGGGCATATGGGTGTGAACCAAAATTCTCTTTTACTTGCAACAAAACCGAGTCTCGCTTTATATCTATAACCAACGTGGAGTTATATGGCTATGACTACGGGGCCATGGCAAATTACACACTTGATCAGTGTAAGGAGTTATGCTTGCAATTGTGCGACTGTAAAGGTATCCAGTATAGCTATGAATATGGTCCTGGCACTTATACCTGTTATCCGAAGTTGCAGTTATGGAATGGGTATCGTACACCAGATTTTAGTGCTGATCTGTACTTGAGACTGCCAGCAAGCAGTTCATATTCTTATGACGAGGAGTCCATAGATGAGTACAGTATTTCTTGTTCCGCTAATTCAAAAATAATACAACTCGAAAGAGCGTATGCCATAGACCATGGAAACAGATATGTTAAGTTCATGCTCTGGTTTGTAGCAGGAGTGGGTGGACTTGAAATTTTGTGCATATTTCTGGTTTGGTATTTTTTGTTAAGGACAAGGCAACTTTCTGCAGATGCACGAGTTTATAGTCGGGCGTTAGCTGGCTTTAGAAAATTCAGTTATTCTGAGCTGAAACAAGCCACCGAAGGTTTTAGTAAAGAGATCGGAAGGGGTGCAGGAGGGATTGTATACAAAGGTGTCTTGTCTGATCAACGAGTTGCAGCAATAAAGAGACTGAAGGAAGCTAATCAAGGAGAAGAAGATTTCCTTGCGGAAGTAAGCATCATCGGAAGGCTTAACCACATGAACTTGATTGAGATGTGGGGATATTGTGCTGAGGGAAAACACAGGCTACTTGTGTACGAGTACATGGAGCATGGATCTCTAGCAGAAAATATCAAGTCTAATGGATTGGATTGGACAAAAATGTTTGACATAGCCTTAGGCACGGCAAAAGGTCTTGCTTATATCCATGAGGAGTGCTTGGAGTGGATTCTGCACTGTGATGTAAAGCCCCACAATATACTTCTTGATTCTAATTATCAGCCAAAGGTTGCAGATTTTGGGCTGTCAAAGCTGCGGAGCAGAAATGAAACTAAATACTCTAGTTTTTCAAGGATACGAGGAACCAGAGGTTACATGGCTCCTGAGTGGGCTTTCAATCAACCAATCACCTCCAAAGTTGATGTTTATAGCTACGGGATTGTTATCTTGGAAATGGTCACGGGAAAGAGCGCAACAATGGACATTCATACCTCTTATGGAGTAGAGAGGCAGCGTCTCAGCCTGGTCACGTGGCTGAAAGAGAAACAGAATGAAGGTTCTGCATGGGTTCATGAAATCTTAGACCACACCATAGAAGGAGGTTATGACGAAAGTAAGATGGAAGCTTTGGCGAGAGTGGCTTTGCAATGTGTGGAGGAAGAGAAGGACAAGAGGCCCACCATGAGCCAAGTTGTAGAGATGCTTCAGAAATCTAGCCGCGAAAAAGATAATCAGGGATCATTATGA 2412 0.4366 MGIISTLWLFLFHFVLCLQLSSSAVDTISQGSSLSVEKPEDVMLSPNGMFSAGFYAVGDNAYSFAIWFSESNGQTQNATAVWMANRDQPVNGKRSKLSLLDNGNLALTDADGSLVWSTNTVSLSSVHLSLNDVGNLVLRVGDGVILWQSFDFPTDTLVPQQVFTRHAKLVSSRSDTNKSSGFYSLFFDSDNILRLLYDGPEVSGLYWPDPWLAPWQANRESYNNSRVAVLDTLGNFSSSDELTFMTSDYGTVIQRRFTVDYDGNIRVYSRRHGGEKWSTTWQATSRPCRIHGICGPNSLCLYNVVSGIKCSCLPGYKMTNDGDWAYGCEPKFSFTCNKTESRFISITNVELYGYDYGAMANYTLDQCKELCLQLCDCKGIQYSYEYGPGTYTCYPKLQLWNGYRTPDFSADLYLRLPASSSYSYDEESIDEYSISCSANSKIIQLERAYAIDHGNRYVKFMLWFVAGVGGLEILCIFLVWYFLLRTRQLSADARVYSRALAGFRKFSYSELKQATEGFSKEIGRGAGGIVYKGVLSDQRVAAIKRLKEANQGEEDFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEHGSLAENIKSNGLDWTKMFDIALGTAKGLAYIHEECLEWILHCDVKPHNILLDSNYQPKVADFGLSKLRSRNETKYSSFSRIRGTRGYMAPEWAFNQPITSKVDVYSYGIVILEMVTGKSATMDIHTSYGVERQRLSLVTWLKEKQNEGSAWVHEILDHTIEGGYDESKMEALARVALQCVEEEKDKRPTMSQVVEMLQKSSREKDNQGSL 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4276g00001 803 CDD EGF 287 316 - -
Gabi4276g00001 803 CDD STKc_IRAK 522 792 - -
Gabi4276g00001 803 FunFam Putative receptor protein kinase ZmPK1 22 152 - -
Gabi4276g00001 803 Gene3D Phosphorylase Kinase; domain 1 484 590 - -
Gabi4276g00001 803 CDD PAN_AP_plant 335 417 - -
Gabi4276g00001 803 SUPERFAMILY Protein kinase-like (PK-like) 498 790 IPR011009 -
Gabi4276g00001 803 FunFam S-receptor-like serine/threonine-protein kinase 485 590 - -
Gabi4276g00001 803 Pfam D-mannose binding lectin 79 167 IPR001480 -
Gabi4276g00001 803 Gene3D Transferase(Phosphotransferase) domain 1 591 802 - -
Gabi4276g00001 803 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 209 IPR036426 -
Gabi4276g00001 803 SMART blect_4 25 153 IPR001480 -
Gabi4276g00001 803 Gene3D - 153 281 IPR036426 -
Gabi4276g00001 803 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Gabi4276g00001 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Gabi4276g00001 803 Pfam S-locus glycoprotein domain 237 318 IPR000858 GO:0048544
Gabi4276g00001 803 SMART ntp_6 338 416 IPR003609 -
Gabi4276g00001 803 ProSiteProfiles Bulb-type lectin domain profile. 25 151 IPR001480 -
Gabi4276g00001 803 Pfam Protein kinase domain 519 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00001 803 Gene3D - 20 152 IPR036426 -
Gabi4276g00001 803 SMART serkin_6 516 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00001 803 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 800 - -
Gabi4276g00001 803 ProSiteProfiles Protein kinase domain profile. 516 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4276g00001 803 CDD B_lectin 44 153 IPR001480 -
Gabi4276g00001 803 PANTHER OS07G0415500 PROTEIN 4 792 - -
Gabi4276g00001 803 PIRSF SRK 1 802 IPR024171 GO:0004674
Gabi4276g00001 803 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4276g00001 Gabi-Chr4276 24275 26686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4276g00001 502 803 Receptor kinase-like Gene Family AT3G58690 40.446 1.07e-63 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4276g00001 Pkinase 8.6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4276g00001 - - gmx:100819308 1208.36