Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4274g00005 ATGCGAACGCTTTGCGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCTGATGAGGCCGCTCTCTGCCGTGCCTGTGATGAGAAGGTTCATATGTGTAATAAGCTAGCTAGCCGGCATGTAAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCCTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGTCAAAAGAAAGCATGAAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCCGGTCATGTGGAAAACCCAGCTTCACAACCTCTGGACCCAGGTGAGACTAAAAGAGGACAAAATCAACTGCCCAAAATAAAAATGGGAGAAAAACAACAAAATCACAGGATGCCAGAACCTGATACTGGTGGGCATGCCATGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTCACAGAATGCATGAACAAACATCAAATAATCAGCCATAA 540 0.45 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGVKRKHERYLLFRQRVEFPGDKPGHVENPASQPLDPGETKRGQNQLPKIKMGEKQQNHRMPEPDTGGHAMMETKMIDLNMKPHRMHEQTSNNQP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4274g00005 179 MobiDBLite consensus disorder prediction 105 153 - -
Gabi4274g00005 179 Gene3D Classic Zinc Finger 2 95 - -
Gabi4274g00005 179 SMART bboxneu5 51 96 IPR000315 GO:0008270
Gabi4274g00005 179 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gabi4274g00005 179 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Gabi4274g00005 179 FunFam B-box zinc finger protein 19 2 92 - -
Gabi4274g00005 179 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Gabi4274g00005 179 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Gabi4274g00005 179 CDD Bbox1_BBX-like 56 96 - -
Gabi4274g00005 179 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi4274g00005 179 CDD Bbox1_BBX-like 4 47 - -
Gabi4274g00005 179 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Gabi4274g00005 179 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4274g00005 Gabi-Chr4274 35504 38941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4274g00005 1 178 C2C2-CO-like Transcription Factor Family AT4G38960 62.011 1.51e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gabi4274g00005 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4274g00005 - - vun:114176173 339.732