Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4274g00003 ATGCGAACGCTTTGCGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCTGATGAGGCCGCTCTCTGCCGTGCCTGTGATGAGAAGGTTCATATGTGTAATAAGCTAGCTAGCCGGCATGTAAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCCTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGTCAAAAGAAAGCATGAAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGATAAACCCGGTCATGTGGAAAACCCAGCTTCACAACCTCTGGACCCAGCCATAAGTCATGCAACTGGTCAATGCAGTTCTGACAAGATCTTACACCAGAAATCTTCAGAGATAAATGGCTTATATATGTCTCATGCATGCTAG 459 0.4662 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGVKRKHERYLLFRQRVEFPGDKPGHVENPASQPLDPAISHATGQCSSDKILHQKSSEINGLYMSHAC 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4274g00003 152 SMART bboxneu5 51 96 IPR000315 GO:0008270
Gabi4274g00003 152 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gabi4274g00003 152 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Gabi4274g00003 152 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Gabi4274g00003 152 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 126 - -
Gabi4274g00003 152 Gene3D Classic Zinc Finger 2 95 - -
Gabi4274g00003 152 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi4274g00003 152 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Gabi4274g00003 152 CDD Bbox1_BBX-like 4 47 - -
Gabi4274g00003 152 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Gabi4274g00003 152 FunFam B-box zinc finger protein 19 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4274g00003 Gabi-Chr4274 35504 38950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4274g00003 1 150 C2C2-CO-like Transcription Factor Family AT4G38960 62.963 1.08e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gabi4274g00003 zf-B_box 8.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4274g00003 - - vun:114176173 247.669