Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4273g00001 ATGTGTTGTGGGGGGAAACAGGGTGCGAGAGCTCTGCTAGCATGGTGTAATATTAGATACGATTTGTACAAGTTTTATTATACAACTGAAACATCAGCAGCATCGCCCCTGGTTCTTTCTCATCCTCCTTCTTCAGTTGGGGATGAAAGTGGCACAATACAATCGCTACTGTTCAATTTGGCCACAATTGAGGCTGCCACAAATAAGTTTTCCTATGAAAACAAAATAGGAAAAGGTGGATTTGGAGAGGTTTACAAGGGTGTTCTTTTAGATGGACGAGAAATAGCTGTAAAAAAACTCTCGTTGTCGGTAACCTCCTTGCAGGGTACAGTAGAGTTTATGAATGAAGCTATCCTTGTGGCTAAGCTTCAACATAGAAATTTAGTGAGGCTGTTGGGATTTTGCTTGGAGGGGCAGGAGAAGATGCTTATCTATGAATACATACCAAACAAAAGCCTTGATCGTTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAGGACGCTACAAGATCATAGTTAGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTCTAATTATACATCGTGATCTCAAAGCTAGCAATGTTCTACTAGATGAAAACATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAAGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGAACGTATGGTTACATGTCTCCAGAATATGCAATGCGTGGACAATTCTCTGTGAAATCAGATGTGTTCAACTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGATTTTTGTCAAACTAAACATGCCGATGACCTCCTAAGCTATGCTTGGAAAAATTGGACGGAGCAAACACCTTTGGAGTTGCTGGATCCAACCCTGAGAGATTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTGTGCATTCAGGAAAATCCATCCGACAGGCCTTCGATGGCAACTATTTCACTTATGTTGAACAGTTATTCAGTTACCTTGTCATTACCTCGAAAACCAGCATCTTTCCTGCATGGAAGGACACCTGACATGCTAAAAAATGGGCTTCATTCTGATGAGTCCGCCACCAGTTCAATTCTGTGGTCTAATAATGAAGTATCCATTACTGAAGTATACCCTCGATAA 1194 0.402 MCCGGKQGARALLAWCNIRYDLYKFYYTTETSAASPLVLSHPPSSVGDESGTIQSLLFNLATIEAATNKFSYENKIGKGGFGEVYKGVLLDGREIAVKKLSLSVTSLQGTVEFMNEAILVAKLQHRNLVRLLGFCLEGQEKMLIYEYIPNKSLDRFLFDPVKQRELDWSGRYKIIVSIARGILYLHEDSQLLIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFNFGVLVLEIVSGKKNTDFCQTKHADDLLSYAWKNWTEQTPLELLDPTLRDSYSRNEVIRCIHIGLLCIQENPSDRPSMATISLMLNSYSVTLSLPRKPASFLHGRTPDMLKNGLHSDESATSSILWSNNEVSITEVYPR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4273g00001 397 CDD STKc_IRAK 76 344 - -
Gabi4273g00001 397 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 38 147 - -
Gabi4273g00001 397 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Gabi4273g00001 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Gabi4273g00001 397 SMART serkin_6 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4273g00001 397 Pfam Protein tyrosine and serine/threonine kinase 72 340 IPR001245 GO:0004672|GO:0006468
Gabi4273g00001 397 SUPERFAMILY Protein kinase-like (PK-like) 54 379 IPR011009 -
Gabi4273g00001 397 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 393 - -
Gabi4273g00001 397 FunFam cysteine-rich receptor-like protein kinase 10 148 350 - -
Gabi4273g00001 397 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Gabi4273g00001 397 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
Gabi4273g00001 397 ProSiteProfiles Protein kinase domain profile. 70 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4273g00001 Gabi-Chr4273 6735 11734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4273g00001 24 397 Receptor kinase-like Gene Family AT4G11530 60.000 6.83e-155 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4273g00001 PK_Tyr_Ser-Thr 8.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4273g00001 - - gmx:113000776 592.038