LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4271g00001	ATGGAGCAGAATAACGTTATCGCACCGTTCGTTTTAAAGACATACCACATGGTGAATGATCCCAACACCGATAAGCTTATCACGTGGGGCCCAAACAACAACAGCTTCATCGTCCTCGACCCCCTCGATTTCTCTCACTCCCTTCTCCCTGCTTTCTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGGTGGATCCGGATAAGTGGGAGTTTGCGAACGAGTGGTTCCTGCGAGGGCAGAAACACTTGTTGAAGAACATCGTGAGGAAGAAGCACGGTGGTGGAAGGAATAACGCATATTCGAAGCTCGAGGATTTGGACGATGAGGCCTTGGTGATGGAGATTGCGAGGTTGAAGGAGGAACAGAAGGCTTTGGAAGAGGAGCTTCAAGGTATGAACAAGAGGTTAGAGACAACAGAGAAACGACCACAGCAAATGATGTCTTTTCTCTGCAAAGTCGCCGAGGATCCTCAAGTTCTTTCTCGAATACTCCTCGAGAGAGAGAGGAAGCAGCTTGGGGAGAAGAAACGGCGGTTGATATCGGCGGCGGCGGCTACGTCGTCTTCCTCGTCGTCGGGCATGGCGGCGACGAATTCGTCGGTGAAGACGGAGTTTGAGGAAGACGAAGCAACTGTGGGTAATATAATATCTTCATCATCGCCGGAGACAGGTTTTGAAATTCATAATTTTTGCCGTGCGGTGCCGCTGTCTCCGCCGCAGGAGGCTACGCCGGCGGTTTGGTGGGGGCAGGCGCATGGGATTGGCCAACAGGGTGGTTATGGTTATAATTGTGCTGCCGCTCCGGCACCGTTGACGGAGGTGTCTGTGGCGGTGCCGCCGCCAATGGGAGGAGGCTATCCGGGGTACGAGAATAATAATGGTAAGGGGCGGGTGAGTTATTTCAGTGATATGGCGGTAGAGTGCAGTTCACTGCCACCTTATCCGTTTTCGCTGTTGGAAGGTGGCTTTTAG	999	0.5195	MEQNNVIAPFVLKTYHMVNDPNTDKLITWGPNNNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRKKHGGGRNNAYSKLEDLDDEALVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMSFLCKVAEDPQVLSRILLERERKQLGEKKRRLISAAAATSSSSSSGMAATNSSVKTEFEEDEATVGNIISSSSPETGFEIHNFCRAVPLSPPQEATPAVWWGQAHGIGQQGGYGYNCAAAPAPLTEVSVAVPPPMGGGYPGYENNNGKGRVSYFSDMAVECSSLPPYPFSLLEGGF	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4271g00001	332	MobiDBLite	consensus disorder prediction	191	215	-	-
	Gabi4271g00001	332	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Gabi4271g00001	332	Gene3D	-	2	100	IPR036388	-
	Gabi4271g00001	332	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4271g00001	332	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4271g00001	332	Coils	Coil	117	151	-	-
	Gabi4271g00001	332	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	216	IPR027725	-
	Gabi4271g00001	332	MobiDBLite	consensus disorder prediction	191	210	-	-
	Gabi4271g00001	332	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4271g00001	332	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4271g00001	332	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4271g00001	332	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4271g00001	332	FunFam	Heat stress transcription factor B-4	2	100	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4271g00001	Gabi-Chr4271	53858	55143	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4271g00001	6	196	HSF	AT3G24520	64.615	4.64e-88	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gabi4271g00001		HSF_DNA-bind	1.2e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4271g00001	K09419		-	gmx:100794896	394.43