Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4271g00001 ATGGAGCAGAATAACGTTATCGCACCGTTCGTTTTAAAGACATACCACATGGTGAATGATCCCAACACCGATAAGCTTATCACGTGGGGCCCAAACAACAACAGCTTCATCGTCCTCGACCCCCTCGATTTCTCTCACTCCCTTCTCCCTGCTTTCTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGGTGGATCCGGATAAGTGGGAGTTTGCGAACGAGTGGTTCCTGCGAGGGCAGAAACACTTGTTGAAGAACATCGTGAGGAAGAAGCACGGTGGTGGAAGGAATAACGCATATTCGAAGCTCGAGGATTTGGACGATGAGGCCTTGGTGATGGAGATTGCGAGGTTGAAGGAGGAACAGAAGGCTTTGGAAGAGGAGCTTCAAGGTATGAACAAGAGGTTAGAGACAACAGAGAAACGACCACAGCAAATGATGTCTTTTCTCTGCAAAGTCGCCGAGGATCCTCAAGTTCTTTCTCGAATACTCCTCGAGAGAGAGAGGAAGCAGCTTGGGGAGAAGAAACGGCGGTTGATATCGGCGGCGGCGGCTACGTCGTCTTCCTCGTCGTCGGGCATGGCGGCGACGAATTCGTCGGTGAAGACGGAGTTTGAGGAAGACGAAGCAACTGTGGGTAATATAATATCTTCATCATCGCCGGAGACAGGTTTTGAAATTCATAATTTTTGCCGTGCGGTGCCGCTGTCTCCGCCGCAGGAGGCTACGCCGGCGGTTTGGTGGGGGCAGGCGCATGGGATTGGCCAACAGGGTGGTTATGGTTATAATTGTGCTGCCGCTCCGGCACCGTTGACGGAGGTGTCTGTGGCGGTGCCGCCGCCAATGGGAGGAGGCTATCCGGGGTACGAGAATAATAATGGTAAGGGGCGGGTGAGTTATTTCAGTGATATGGCGGTAGAGTGCAGTTCACTGCCACCTTATCCGTTTTCGCTGTTGGAAGGTGGCTTTTAG 999 0.5195 MEQNNVIAPFVLKTYHMVNDPNTDKLITWGPNNNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIVRKKHGGGRNNAYSKLEDLDDEALVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMSFLCKVAEDPQVLSRILLERERKQLGEKKRRLISAAAATSSSSSSGMAATNSSVKTEFEEDEATVGNIISSSSPETGFEIHNFCRAVPLSPPQEATPAVWWGQAHGIGQQGGYGYNCAAAPAPLTEVSVAVPPPMGGGYPGYENNNGKGRVSYFSDMAVECSSLPPYPFSLLEGGF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4271g00001 332 MobiDBLite consensus disorder prediction 191 215 - -
Gabi4271g00001 332 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Gabi4271g00001 332 Gene3D - 2 100 IPR036388 -
Gabi4271g00001 332 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4271g00001 332 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4271g00001 332 Coils Coil 117 151 - -
Gabi4271g00001 332 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 216 IPR027725 -
Gabi4271g00001 332 MobiDBLite consensus disorder prediction 191 210 - -
Gabi4271g00001 332 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4271g00001 332 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4271g00001 332 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4271g00001 332 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4271g00001 332 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4271g00001 Gabi-Chr4271 53858 55143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4271g00001 6 196 HSF AT3G24520 64.615 4.64e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi4271g00001 HSF_DNA-bind 1.2e-30 CL0123