Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4265g00003 ATGGCAAGCCAAGAACCATCGTTGCCCTCTTCTTCCTTTAGCTATCGATGGAAATACGATGTGTTTCTCAGCTTTAGAGGAGAAGATACTCGTCACGGTTTCACTGGCCATCTCTACAAAACTCTTCATGACAGGGGAATCCACACCTTCATTGATGATGAAGAGCTTCAAAGGGGAGAGGGAATCACACCAGCACTTCTCAAGGCTATTGAGGAATCCAGGATTGCCATCATTGTGCTCTCTAAGAACTATGCTTCTTCTTCATTTTGCTTGGATGAACTAGTCCATATCCTTCACTGCATCAAGGAAAAAGGTCGGTTGGTTTTGCCAGTTTTTTATGACGTTGATCCTTCTCACGTGCGACATCAGAGAGATAGCTATGAAGAAGCACTCTCTACTCATGAGAAGAGGTTTAAGGATGACATGGAGAAGGTGCAGAAATGGAGGGTGGCTCTGCGTCAAGCAGCTGACTTGTCTGGCTTTCATTTCAAACAACAAGGGAATGAAAATGAATATGAGTTTATTGGGAAAATTGCTAAAGTGGTCTCCAACAAGATTAATCGGGTTCCTTTACATGTTGCGGATTATCCAGTTGGATTGGAGTCTAAAGTGCTACAAGTAATCTCACTTCTCAATGTTGGATCTGATGGAGTCCATATGATAGGGATCCATGGAATTGGTGGCATAGGGAAGACAACCGTTGCTCGAGCAATTTATAATTTGATTGCCGAATCATTTGAAGCTTTGTGTTTTCTTGATAATGTAAGAGAAAATTCAATTAAATATGGATTAGAACATATCCAAGAGACACTTATTTCTAAAGTATTCGGAGAGAAGGATATTAAGTTAGCAAGTGTCAATGAAGGAATTTCAATAATAGAGCATAGGCTCCACCAAAAGAAAGTTCTTTTGGTTCTTGATGATGTTGACAGACTGGAGCAGTTGCGGGCAACTGTTGGAGGGCTTGATTGGTTTGGTTGTGGCAGCAAAATCATCATTACAACTCGGGACAGGCATTTGCTAACAAGACATGGGGTTGAGAAAACTTATGAGGTAGATGGGTTGAATAATAAAGAAGCTCTTGAGTTACTTTGTTGGAATGCTTTTAAAACTGACAAAGTTGATTCGAGTTATGTGGATATTTTAAAGCGTGCAATAACTTTTTCTTCTGGCCTTCCACTAGCATTGGAGGTGATAGGTTCCTACTTGTTTGGGAAAGGGATACAAGAATGGGAATCGGCATTAGATCAGTATGAGAGAATTCCTAATAAAGAGATCCAAAAGATACTTGAAATAAGTTTTCATTCTTTGGGGGAATATGAGCAGGAAATTTTTATTCATATTGCTTGTTACTTCAAAGGAAATCATCTAGCATATGTCAAAAAATTACTTTATGCTCATCATGGTTTCTGCCCAGAATATGGTATTGGAGTGCTAATTGAAAAATCTCTCATAAAGATTGTGTATGGTCAAGTAACATTGCATGACCTGATAGAGGACATGGGTAAAGAAATTGTCCGACAAGAAGCACCAAAAGAGCCTGGCCAACGTAGTAGATTATGGTTCCCTGATGATATAGTTCAAGTTTTAGAAGATAATACGGGAACTAGTAGTATTCAAATCATAATTCTGGATTTCCTCAAATTTGAAGAAGTAGTAGAATGGGATGGAAACGGCTTCAAGCAGATGAGAAACCTGAAAACACTCATTATAAGAAATGCTCGTTTTTCTGAAGGCCCCAAACATCTTCCAAGTAGTTTGAGAGTACTGGAATGGTGGGAATATCCTTCACCATCTTTACCATCTAATTTTAATCCAAAGAAACTTGTGATACTGGAGTTACCCCAAAGTCGCTTAGTGTCAATTGATTTGCTCATGTCAAATAAGGTGTTTGTGAATATGAAAGTTTTGAATTTTAATCATTGTCAATATATAACAGAGATACCTGATGTGTCTGGAGTCCCAAATTTAGAAGAATTATCATTTGGAGACTGTGAGAATTTAATTAAAATTCATGAATCGGTTGGATTCTTGAATGAACTTAAAATCTTGAACGCTGAAGGTTGCAAGAAGTTTAGGAGTTTTCCACCCATCAAGTTGACCTCACTTGAAAAACTCAAGCTTTCATATTGTCCTAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAAAATAAAACTTATTCATGTCTTTGACACTCGGATAAAAGAACTGCCATTTTCAATTCAAAACCTCACTCAGCTTGAAAGAATAGATCTGAAGCCTTGTGGAGGAATGTTTCATTTACCAAGGAGCATTTTGATGTTGCGAGAGTTTGATGAGTTGAATGTTTGGAATTGTGAGGGGTTGCTTATATCTAAACAGGAGGAAGGTGATGATGCACAAGTGAGCTCATTGGAGTTTGAAATTAGCTTTTGGGAATGCAATTTATCAGATGAATTCATTCGAAAAGGTCTCCCTTTGTTTGTCAATGAGTTAACCCTAACCGATAGTAATTTCACAATTCTTCCGGTATGCATGAGAGAATGTCTCTTTTTGACAGAAATTATGTTATATCGTTGCAAGAATTTTTGTGAGATTGGAGGGATTCCACCCAACTTAAAAAAATTCACTGCAAGGGAGTGCAAATCCTTGAAAGATTTAGACCTCACACTATTCCCTGAATGTTTGACGACACTTGAGTTGTATAATTGCGAGAATCTTCAAGAAATTAGAGGGATTTCACCCAACATAAGAACTTTGGATACATCAGAATGCCCATCCTTGACTTCCGAGTGTAGAAACATGTTACTGAATGAGGAATTGCACAAGGAAGGTGGAGACAAAGTGTTTCTCTTGCCAGAAACAAAGATTCCAGAGTGGTTTGAGAATTGTTTCAATGGACCGTCAATTTCTTTCAGGTTCCGTAACATGGACTTCCCTGCGATATCTATATGTTTTGCTATTCGACTCAATAATGTAAAATCTGGCACTGGTAGTGAGTATTGGCCCCGTTTTAAGCTCAATATTGAAGTCAATGGCATTTCAAAAGTTACAGGAGATGATTTCTCTTTGGGTTGCAAAGCAGGGGATTATACAGTTCTTTTTGATATAAAACAGGAAATATTCTTACTTGATGATGTTGTTCTTCTAGAAGAAAATACATGGAATTGTGTGGTGTGTACTATATCAAACAGAACAGACCCAGTGTTTGTCAAACAAAGTGGAATCCATGTATTCGAAGAAGGAAGGAGCATGGCGGACATTCAATTCACTGATCCACTGTTGCTGGAAGAAGAGCATAGATTGGTGGACATGGAAGATTCTCAGAAACATTTTGTGCAGCACCAAAATAATTTGGCTCCATTGCCTTTTTTGGAAACAATAAATTTGGGAAAGGGTAGAGGGTTGCTTTCATTGCTTCCACCTCCAGCATTGAATGATAATGTGATTTGGCATTCAAATTTAATGTTATCAAGGCTGAGAAGTAGCACTCCTAATTTCCAAGGCTGTGAAATTGTGTCCAGAGAGAGGAAAATAGGTATGTTAAATTTGGACTTGAACAATGGAGCCAGTGAACCTTGTTCTCCTGCACCTTCAAAAGTTGTTTTCAATTCAGCAGTGTCAAGCTTTGCTAGTGGTGCCGCTGGTGAAGAAGGAGAATCTTCTTCTCAAGATTGA 3666 0.3827 MASQEPSLPSSSFSYRWKYDVFLSFRGEDTRHGFTGHLYKTLHDRGIHTFIDDEELQRGEGITPALLKAIEESRIAIIVLSKNYASSSFCLDELVHILHCIKEKGRLVLPVFYDVDPSHVRHQRDSYEEALSTHEKRFKDDMEKVQKWRVALRQAADLSGFHFKQQGNENEYEFIGKIAKVVSNKINRVPLHVADYPVGLESKVLQVISLLNVGSDGVHMIGIHGIGGIGKTTVARAIYNLIAESFEALCFLDNVRENSIKYGLEHIQETLISKVFGEKDIKLASVNEGISIIEHRLHQKKVLLVLDDVDRLEQLRATVGGLDWFGCGSKIIITTRDRHLLTRHGVEKTYEVDGLNNKEALELLCWNAFKTDKVDSSYVDILKRAITFSSGLPLALEVIGSYLFGKGIQEWESALDQYERIPNKEIQKILEISFHSLGEYEQEIFIHIACYFKGNHLAYVKKLLYAHHGFCPEYGIGVLIEKSLIKIVYGQVTLHDLIEDMGKEIVRQEAPKEPGQRSRLWFPDDIVQVLEDNTGTSSIQIIILDFLKFEEVVEWDGNGFKQMRNLKTLIIRNARFSEGPKHLPSSLRVLEWWEYPSPSLPSNFNPKKLVILELPQSRLVSIDLLMSNKVFVNMKVLNFNHCQYITEIPDVSGVPNLEELSFGDCENLIKIHESVGFLNELKILNAEGCKKFRSFPPIKLTSLEKLKLSYCPSLENFPEILGKMEKIKLIHVFDTRIKELPFSIQNLTQLERIDLKPCGGMFHLPRSILMLREFDELNVWNCEGLLISKQEEGDDAQVSSLEFEISFWECNLSDEFIRKGLPLFVNELTLTDSNFTILPVCMRECLFLTEIMLYRCKNFCEIGGIPPNLKKFTARECKSLKDLDLTLFPECLTTLELYNCENLQEIRGISPNIRTLDTSECPSLTSECRNMLLNEELHKEGGDKVFLLPETKIPEWFENCFNGPSISFRFRNMDFPAISICFAIRLNNVKSGTGSEYWPRFKLNIEVNGISKVTGDDFSLGCKAGDYTVLFDIKQEIFLLDDVVLLEENTWNCVVCTISNRTDPVFVKQSGIHVFEEGRSMADIQFTDPLLLEEEHRLVDMEDSQKHFVQHQNNLAPLPFLETINLGKGRGLLSLLPPPALNDNVIWHSNLMLSRLRSSTPNFQGCEIVSRERKIGMLNLDLNNGASEPCSPAPSKVVFNSAVSSFASGAAGEEGESSSQD 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4265g00003 1221 PRINTS Disease resistance protein signature 698 714 - -
Gabi4265g00003 1221 PRINTS Disease resistance protein signature 389 403 - -
Gabi4265g00003 1221 PRINTS Disease resistance protein signature 220 235 - -
Gabi4265g00003 1221 PRINTS Disease resistance protein signature 296 310 - -
Gabi4265g00003 1221 Gene3D Ribonuclease Inhibitor 524 717 IPR032675 -
Gabi4265g00003 1221 Pfam NB-ARC domain 203 431 IPR002182 GO:0043531
Gabi4265g00003 1221 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 903 IPR044974 GO:0006952
Gabi4265g00003 1221 Gene3D - 15 183 IPR035897 -
Gabi4265g00003 1221 ProSiteProfiles TIR domain profile. 17 186 IPR000157 GO:0007165
Gabi4265g00003 1221 SUPERFAMILY L domain-like 507 928 - -
Gabi4265g00003 1221 Pfam TIR domain 18 188 IPR000157 GO:0007165
Gabi4265g00003 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 448 IPR027417 -
Gabi4265g00003 1221 Gene3D - 184 348 IPR027417 -
Gabi4265g00003 1221 Gene3D Ribonuclease Inhibitor 718 939 IPR032675 -
Gabi4265g00003 1221 SMART AAA_5 217 355 IPR003593 GO:0016887
Gabi4265g00003 1221 Gene3D - 354 438 IPR042197 -
Gabi4265g00003 1221 SMART till_3 18 158 IPR000157 GO:0007165
Gabi4265g00003 1221 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 188 - -
Gabi4265g00003 1221 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4265g00003 Gabi-Chr4265 46473 52500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4265g00003 9 782 WRKY Transcription Factor Family AT4G12020 30.489 1.27e-88 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4265g00003 - - gmx:121173697 1274.23