Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4260g00003 ATGAACAAACCCCAAATTGAAATTGCCATTCCTCAGTTGTTTAGATGCCCCATCAGTCTAGACTTGTTCGAAGATCCAGTGACTTTATGCACAGGCCAAACCTATGACAGGTCAAGCATAGAAAAATGGCTAGCTGCAGGTAATCTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCTTTCTATTGTTCCCAATCACACTCTACGCCATTTGATTGATCAGTGGTTTCAATTGGATCCCCAATTTGACCCTGGTAACTCTGCTACTGTTGATTATTTAACAGCAATAAAGCACACCCTTGAATCTGAAGAGGCCACCTTAGAAAACAAGCTCCAAGCACTTGAGAAAATTAGAGTTCTTTCTGATGAGTATTGTTCTTTCAAAAAATCTTGTTTCCACCAATTGAGTCTCTTGCCTCTACTTTTGGAACTAGTTTTTGGAAGAGAAGATGCTCAACTGTCAAAAAGTCACATGGAATTCAAGGAACTAGCACTTTCTTGCATTCTAAAATTGTTGCCTCTTGTGAGTTTGGTGCCTCTAAATATGATCAAAGATGAGTCTAAATTAGCAACATTTCTGCTATTATTTGAAAGGGGAACTAGCTCGGTTAAGACTAGTTTATGTCATGTAATAGATTCAACAGCAGCATTGCAGACAGAAGAGGTATGTTATGTGCTTGGAAAGTCTCACAAACTACTGCATGAGATTATTCTACTTGTTAGCCAAAATTGTGAGGTTTCTAAGGCTGCAATCAAAGCCTTGTCAGCATTATGTTCCTTGCAATCTAATAGAGAGAGTTTAGTGAAGGCAGGAGCAATAGATGGAATCATAACATACATTTCAGGTTCTGAAACAAGACAGAAAAACATGGCTCCAGTGGCAATGGCAATAATAAAGAAACTTTTGGTGCTAGAGAGTGCTAAAGAGGCATTGGTGAATCACCCAAATGGTATTCAAACTTTGGTGAAAATGGTTTTCAGGGTATGTAATCAAGAGTGCAGTGAGAGTGCTGTTGGGATACTTTCAATTCTTTGTCTTGATTTCGGGCGTGCAAGAGAGGAAGCCATTGAGTCTGGAATTTTGACTCAGTTGTTGTTTCTTCTGCAGAGTCAGTGTGGAACCAAAACCAAAACGAAGGCAAGAATGCTGCTCAAGTTGCTAAGATCCAAGTGGAATGAGGAACCAAAGTAG 1194 0.3961 MNKPQIEIAIPQLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLHDLSIVPNHTLRHLIDQWFQLDPQFDPGNSATVDYLTAIKHTLESEEATLENKLQALEKIRVLSDEYCSFKKSCFHQLSLLPLLLELVFGREDAQLSKSHMEFKELALSCILKLLPLVSLVPLNMIKDESKLATFLLLFERGTSSVKTSLCHVIDSTAALQTEEVCYVLGKSHKLLHEIILLVSQNCEVSKAAIKALSALCSLQSNRESLVKAGAIDGIITYISGSETRQKNMAPVAMAIIKKLLVLESAKEALVNHPNGIQTLVKMVFRVCNQECSESAVGILSILCLDFGRAREEAIESGILTQLLFLLQSQCGTKTKTKARMLLKLLRSKWNEEPK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4260g00003 397 SUPERFAMILY RING/U-box 7 78 - -
Gabi4260g00003 397 Gene3D - 205 394 IPR011989 -
Gabi4260g00003 397 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Gabi4260g00003 397 PANTHER WDSAM1 PROTEIN 7 396 IPR045185 GO:0061630
Gabi4260g00003 397 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Gabi4260g00003 397 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Gabi4260g00003 397 Coils Coil 98 118 - -
Gabi4260g00003 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 81 IPR013083 -
Gabi4260g00003 397 CDD RING-Ubox_PUB 11 58 IPR045210 -
Gabi4260g00003 397 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Gabi4260g00003 397 SUPERFAMILY ARM repeat 109 379 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4260g00003 Gabi-Chr4260 41508 42764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4260g00003 8 394 U-box Gene Family AT3G19380 30.713 1.27e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4260g00003 - - gmx:100819468 635.18