Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4254g00004 ATGGAGATTGCAGTGCCCTCGTCCACGGAAGGTGTGTCAGGTGAAGAAGAAGAAGAAAGCAATGATATAGATTGTAATGAAGTAAGGGTCTCGTCTACTGCTATGGCAGAACCATCCACCGCCGAAACCACCTCCGCCAGCGATGCTCATCCGCCAGCGCCGGCGCCGGCTTCCTCGCCTAAGAGCTGGGCCGACGAAGCAAATGAAGAAACCAACGCAACGCCGAGCTTCGAGACAGCAACCTCGTCGCTCAACGTCGACGGATTAACGATCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTACAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAATTGAATCTCTCACCGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCAGAAACCTTGTAAGATCCAAGTCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGATCGCACAGGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACACGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGGGATGTTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACAATTAATAAGTGGATGACTTTTAAGAAACTTGGGGTGACAAGTTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAATTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGACATTGTCCAGATTTTTGTTTCGAGAACAGTTAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAATGAAAAAAGATTACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTCGAAATAGGAGAGAATCTGGGGCAAACTATAATAATTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAATTCACTTGTTGTCGCTCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCCGGTCTGCAGCGGACATTCCTGCCGAGGAGCTTGCTAGGAGGACTGGCAGCCCGGTTATTAAGGATGTGCAGAGAATGCCCAGAGTTTGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACGGCTTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAA 1521 0.4576 MEIAVPSSTEGVSGEEEEESNDIDCNEVRVSSTAMAEPSTAETTSASDAHPPAPAPASSPKSWADEANEETNATPSFETATSSLNVDGLTIDENKKPSPKFLDEPEDYNIQAVSSGDTPYTSATTFEELNLSPELLKGLYVEMKFQKPCKIQVVTLPMILNPPNRDLIAQAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYTGISSECAIPADSRDVLPIAKRAPIMAQVVIGTPGTINKWMTFKKLGVTSLKILVFDEADQMLAEDGFKDDSLRIMKGIEKFNSNCQVLLFSATFNDIVQIFVSRTVKQDYNTLFVKELSLDAVKQYKVHCPDELSKIEMKKDYILEIGENLGQTIIFVRTRNSAKMLHKSLVEIGENLGQTIIIVRTRNSAKMLHNSLVVAPVVAPVAPSKGVDKGKRKVVNIVKRKVRSAADIPAEELARRTGSPVIKDVQRMPRVWRSTLLHLKLFLLNQRLLEGRGLLARI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4254g00004 506 PANTHER RNA HELICASE 83 396 - -
Gabi4254g00004 506 MobiDBLite consensus disorder prediction 1 106 - -
Gabi4254g00004 506 Gene3D - 104 338 IPR027417 -
Gabi4254g00004 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 334 IPR014001 -
Gabi4254g00004 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 153 IPR014014 GO:0003724
Gabi4254g00004 506 SMART ultradead3 144 348 IPR014001 -
Gabi4254g00004 506 MobiDBLite consensus disorder prediction 26 47 - -
Gabi4254g00004 506 Pfam DEAD/DEAH box helicase 150 319 IPR011545 GO:0003676|GO:0005524
Gabi4254g00004 506 CDD DEADc_DDX19_DDX25 131 330 - -
Gabi4254g00004 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 327 IPR027417 -
Gabi4254g00004 506 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4254g00004 Gabi-Chr4254 47607 53193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4254g00004 117 389 Eukaryotic Initiation Factors Gene Family AT1G72730 33.217 2.40e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4254g00004 K18655 - gmx:100784739 517.694