Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4251g00001 ATGGCTACCCAAGAATCTCTGCTGCTACACAAACCTAGAAAATCGAAATCCTTTTCCAAAACATTCTGGTTAATCCTCTCTGTGGCTGCTATCCTAAGCTCATCAGCACTTATTGCTTCTTATCTCATCAAACCTCACCATGTCTGTGAACATGCACTTGATACAGCATCATGTTTACAACATGTCTCAGAAGTAGCAGGTACTCAAGCTTTAACCACCTCAAAACACCACAAATTCAATTTGCTCCAATCCTTCCTAATGAAGTCCATTTCACACATTCAGAAATCTATGGACACAGCCAAAGCTATCAAACTCAGGACTAACAGTCCGAAAGAGGAAGCAGCTTTGCATGACTGTGAACAGCTTATGGACATGTCCATCGACAGAGTTTGGGACTCAATGATGGCTCTAACTAAAGAGACCACTGGTTCGCTGCAAGATGCACACTCATGGTTAAGCGGCGTGCTCACTAACCATGTCACTTGCATGGATGGGTTAGAAGGGTCAACTCGGGCACTGATGGAGGTGGCTGAGCTTGACGATTTGATATCCAGAGCAAGAACCTCTCTGGCCTTGCTTGTTGCGGTTTTGCCTCAAAATCCAAAGGGTGAAGTAGAACTCATTGATGAACCATTAAATGGGAACTTTCCCTCGTGGGTGACAAGTAAGGATCGGAGGCTTTTGGAGTCGTCTTCGGTTGGGGATATCAAGGCCAATGTTGTGGTAGCCAAGGATGGGAAGTTCAAGACCGTGGCTGAGGCTGTGGCGTCCGCACCCGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAAAGGGGACGTACAAAGAGAATGTTGATATTGGTAAGACGAAGAAGAATTTGATGCTCGTAGGAGATGGTATGGATGCAACAATAATCACCGGCAGCTTGAATTTTGTCGATGGAACAGGCACCTTTAGCACTGCCACTGTTGCTGCGAATGGTGATGGGTTCATAGCCCAGGATATGTGGTTCCAAAACACAGCAGGCCCAGAGAAGCATCAAGCAGTGGCTCTGCGCGTGAGCGCTGACCAGTCGGTGATAAACCGTTGCCGCATTGACGCTTATCAAGACACTCTCTATGCTCACACCAACAGGCAGTTCTACCGTGACTCTTTCATCACTGGCACCATTGACTTCATCTTTGGAGACGCATCTGTTGTGTTCCAGAAATGCAACCTGGTGGCCCGAAAGCCCATGAGTAACCAGAACAACATGTTCACGGCCCAAGGACGAGTAGATCCAAACCAGAATTCAGGAACTTCGATTCAACAATGTCAACTAACACCGAGCTCGGATCTCAAGCCCGTCGTGGGTTCTGTTAAAACTTATCTGGGCCGCCCATGGAAGAAATACTCCAGAACCGTTGTGATGCAGTCGTCACTTGACAGCCATATAGACCCAGCAGGGTGGGCTCCATGGGATGATGCCAGTAGCGACTTTTTGAAAACGTTGTATTATGGAGAGTACATGAACAGTGGGCCAGGTGCTGGTACCAGCAAGAGAGTGAATTGGCCTGGTTACCATGTCATTACAAGTGCTGCCGAGGCTAGCAAGTTCACAGTAACGCAACTCATACAAGGTAATGTTTGGTTGAAGAACACTGGTGTCACCTTCACTGAGGGCCTCTAG 1653 0.4731 MATQESLLLHKPRKSKSFSKTFWLILSVAAILSSSALIASYLIKPHHVCEHALDTASCLQHVSEVAGTQALTTSKHHKFNLLQSFLMKSISHIQKSMDTAKAIKLRTNSPKEEAALHDCEQLMDMSIDRVWDSMMALTKETTGSLQDAHSWLSGVLTNHVTCMDGLEGSTRALMEVAELDDLISRARTSLALLVAVLPQNPKGEVELIDEPLNGNFPSWVTSKDRRLLESSSVGDIKANVVVAKDGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVDIGKTKKNLMLVGDGMDATIITGSLNFVDGTGTFSTATVAANGDGFIAQDMWFQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDSFITGTIDFIFGDASVVFQKCNLVARKPMSNQNNMFTAQGRVDPNQNSGTSIQQCQLTPSSDLKPVVGSVKTYLGRPWKKYSRTVVMQSSLDSHIDPAGWAPWDDASSDFLKTLYYGEYMNSGPGAGTSKRVNWPGYHVITSAAEASKFTVTQLIQGNVWLKNTGVTFTEGL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4251g00001 550 FunFam Pectinesterase 233 550 - -
Gabi4251g00001 550 SMART PMEI_2 38 192 IPR006501 GO:0004857
Gabi4251g00001 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 170 IPR035513 -
Gabi4251g00001 550 Pfam Pectinesterase 239 536 IPR000070 GO:0030599|GO:0042545
Gabi4251g00001 550 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Gabi4251g00001 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 196 IPR035513 -
Gabi4251g00001 550 Pfam Plant invertase/pectin methylesterase inhibitor 47 173 IPR006501 GO:0004857
Gabi4251g00001 550 PANTHER PECTINESTERASE 31 540 - -
Gabi4251g00001 550 Gene3D - 233 550 IPR012334 -
Gabi4251g00001 550 NCBIfam pectinesterase inhibitor domain 20 170 IPR006501 GO:0004857
Gabi4251g00001 550 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Gabi4251g00001 550 SUPERFAMILY Pectin lyase-like 237 549 IPR011050 -
Gabi4251g00001 550 CDD PMEI-like_4 51 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4251g00001 Gabi-Chr4251 71942 74340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4251g00001 1 550 Carbohydrate Esterase AT1G11580 55.712 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4251g00001 K01051 - gmx:100815836 832.017