Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4249g00001 ATGGGAAACAATTGTGTTGGATCGAGAAACTCGAAAGATGGAGTATTGCCCTCGTTTCTTTCGAGTTCATTCTGTTGTTGGTCACAGCAAACGATTGAAGGGGTTTCACATGACTACGTGGAAATTTCTTGTGCACCTTCACTTGTGAGTAAAAGGGCAAATCCAAATGATCCAGATACTGTTCATCAAAAGCCTCCTGAGGTAGTGAAATTTGACAATAAGGAGATGAAGCAGACAACAGATAAAGAGAGCAATAAACCTTCAGAGGAACAAATAAAGCACGTGGAACAGAACACCATTCCTCCTAAGAACAGCCTTGGTATATTTACACCTACCTGGTTCACAGCTGCTACATTTCTAAGGAAAGATGACCATCGAAAATTTGTTGCTGGCACCAACAACCATCAGGTTTTCCTTAAGCAGCATATTACACATGTTCTTAAGCAGCATATTACCCTAAACCACGTAGAAATTTATTGTGCACCTTCACTTGTGAGTAAAAGGCCAAATCCAAATGATCCAGAGACTGTTCATCAAAAGCCTCTTGAGGTAGTGAAATTTGACAACAAGGAGATGAAGCAGGTGCAGCAGACAACAGATAAAGAGAGCAATAAACCTTCAGAGGAACAAATAAAGCACGTGGAACAGAACACCATTGTACTAGAGCCAGTTAGGCAGAAGGAACATACTAGACCAGCAGAGCCAGCAAAACGAGAAAAGTTCCATAATGTTAAGATGCAATCAATTGCTGGGCTTCAAGTAGATTCGGTTTTGCAGAGAAAAACGGGTTATCTTAAGGAGTACTACAATCTGGGACCAGAACTTGGGCAAGGACATTATGGAACCACTTTCCTTTGTTGGGAGAAAGCTACTGGGAACAAGTATGCCTGCAAGTCCATTCCTAAAGAAAAAATGGTGACAGATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCAGGTATTCCCAATGTTGTTTCCATTAAAGGGGCTTATGAGGATGCTGTTTCGGTTCATGTCGTTATGGAATTATGTGAAGGGGGTGAGCTTTATGATAGGATTGTGGGAAAGGGATATTACACGGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTTGTTAAGGATTGCCACGCCCTTGGAGTAATACATCTTGATCTTAAGCCTGAGAATTTTCTTTTCGTTAATGGCCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGATTGTCTGTTTTCTTTAAACCAGGAGATGTTTTCAAGGATCCGGTTGGAAGTCCTTTTTATATAGCACCTGAAGTTCTAGGCAAACGTTATGGCCCAGAAGCTGATGTCTGGAGTGCTGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGGAACAGAGCGAGAAATATATTGGAATGTATTGCATGGTGATCTTAATTTCTCTTCAGATCCTTGGCTGAATATATCTGAAAGTGCAAAAGACTTGATTAGGAAGATGCTTGTTAGAGATCCTAAACAAAGGATAACAGTTGATGAAGTTCTTCGTCACCCTTGGTTTCAGGTTGATGGAGGTGCGCCTCTTGATTCTGCAGCTTTGAGTCGCCTGAAGCAGTTTTCTTTAATGAAAAAGCTCAAGAAAACGGCTTTTACAATTATTGCACAGAATCTTTCTGAAGAAGAAATTTTTGGATTGAAAGAAATGTTTAAGAAGATAGATACTGACAACAATGGTCAAATAAGTTTTGAAGAACTCAAGGTTGGACTGAAAATGTTTGGTGCTAATCTCAGGGGATCTGAAATTTTCGATCTAATGCAAGCTGATGTTGATAACAGTGGTACAATAGACTATGGAGAATTCATAGATGCAACATTGCATTTAAACAAAGTTGATATGGAAGATCATTTTGTTGACGCATTCTCATATTTTGATAAAGACGATAGTGGCCACATCACTCAAGGTAAGCTTCAAGCTTGTGAAGAATTTGGCACGCAGGATGTCCTCTTGGAGGAAATGATCCGAGAAGCTGATCAGAATAATGATAGCCGAATAGACTACAATGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTAGGTAGTAGCGGTCTAAAGGATAACACTAGTTTTAGCATTGGATTTATGGAGGCACTCTCAGTATGTTAA 2190 0.4023 MGNNCVGSRNSKDGVLPSFLSSSFCCWSQQTIEGVSHDYVEISCAPSLVSKRANPNDPDTVHQKPPEVVKFDNKEMKQTTDKESNKPSEEQIKHVEQNTIPPKNSLGIFTPTWFTAATFLRKDDHRKFVAGTNNHQVFLKQHITHVLKQHITLNHVEIYCAPSLVSKRPNPNDPETVHQKPLEVVKFDNKEMKQVQQTTDKESNKPSEEQIKHVEQNTIVLEPVRQKEHTRPAEPAKREKFHNVKMQSIAGLQVDSVLQRKTGYLKEYYNLGPELGQGHYGTTFLCWEKATGNKYACKSIPKEKMVTDDDVEDVRREIQIMHHLAGIPNVVSIKGAYEDAVSVHVVMELCEGGELYDRIVGKGYYTERKAAKLARTIVSVVKDCHALGVIHLDLKPENFLFVNGHEDSTLKAIDFGLSVFFKPGDVFKDPVGSPFYIAPEVLGKRYGPEADVWSAGVIIYILLCGTPPFWGGTEREIYWNVLHGDLNFSSDPWLNISESAKDLIRKMLVRDPKQRITVDEVLRHPWFQVDGGAPLDSAALSRLKQFSLMKKLKKTAFTIIAQNLSEEEIFGLKEMFKKIDTDNNGQISFEELKVGLKMFGANLRGSEIFDLMQADVDNSGTIDYGEFIDATLHLNKVDMEDHFVDAFSYFDKDDSGHITQGKLQACEEFGTQDVLLEEMIREADQNNDSRIDYNEFVAMMQRGNADLGSSGLKDNTSFSIGFMEALSVC 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4249g00001 729 SMART serkin_6 269 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4249g00001 729 MobiDBLite consensus disorder prediction 192 212 - -
Gabi4249g00001 729 ProSitePatterns EF-hand calcium-binding domain. 580 592 IPR018247 -
Gabi4249g00001 729 ProSiteProfiles EF-hand calcium-binding domain profile. 671 706 IPR002048 GO:0005509
Gabi4249g00001 729 FunFam Calmodulin A 561 703 - -
Gabi4249g00001 729 Pfam EF-hand domain pair 645 701 IPR002048 GO:0005509
Gabi4249g00001 729 Gene3D Transferase(Phosphotransferase) domain 1 355 532 - -
Gabi4249g00001 729 FunFam Calcium-dependent protein kinase 1 271 354 - -
Gabi4249g00001 729 CDD EFh 642 701 IPR002048 GO:0005509
Gabi4249g00001 729 SMART efh_1 675 703 IPR002048 GO:0005509
Gabi4249g00001 729 SMART efh_1 607 634 IPR002048 GO:0005509
Gabi4249g00001 729 SMART efh_1 571 599 IPR002048 GO:0005509
Gabi4249g00001 729 Gene3D - 540 700 - -
Gabi4249g00001 729 PANTHER SERINE/THREONINE-PROTEIN KINASE 257 696 - -
Gabi4249g00001 729 Gene3D - 565 632 - -
Gabi4249g00001 729 SUPERFAMILY EF-hand 563 702 IPR011992 -
Gabi4249g00001 729 ProSitePatterns EF-hand calcium-binding domain. 615 627 IPR018247 -
Gabi4249g00001 729 CDD STKc_CAMK 269 526 - -
Gabi4249g00001 729 ProSiteProfiles Protein kinase domain profile. 269 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4249g00001 729 Pfam EF hand 572 598 IPR002048 GO:0005509
Gabi4249g00001 729 FunFam Calcium-dependent protein kinase 5 355 535 - -
Gabi4249g00001 729 MobiDBLite consensus disorder prediction 75 93 - -
Gabi4249g00001 729 Gene3D Phosphorylase Kinase; domain 1 272 354 - -
Gabi4249g00001 729 ProSitePatterns Protein kinases ATP-binding region signature. 275 298 IPR017441 GO:0005524
Gabi4249g00001 729 SUPERFAMILY Protein kinase-like (PK-like) 267 528 IPR011009 -
Gabi4249g00001 729 ProSiteProfiles EF-hand calcium-binding domain profile. 567 602 IPR002048 GO:0005509
Gabi4249g00001 729 MobiDBLite consensus disorder prediction 75 101 - -
Gabi4249g00001 729 Pfam Protein kinase domain 270 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4249g00001 729 CDD EFh 572 630 IPR002048 GO:0005509
Gabi4249g00001 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4249g00001 Gabi-Chr4249 8655 16293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4249g00001 162 720 EF-hand Containing Proteins AT3G10660 60.788 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4249g00001 Pkinase 6.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4249g00001 K13412 - gmx:100814475 775.393