Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00060 ATGGATGGTTTTTATGATCTGTATGGGATCTTGACTGAGTCAACCTCTGCAAGAATGCCTTCCCTCGTAGATCTACAAGGAACACCAATTTCAGGTAGTGTCACATGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGAGCAAAAAGCCCTAGAGCTGACTGTCAAATCAAGACCTGATTTTGAAGTAGTTATAGATAACGATGTGGTGCACAAGCTTGCAATACTTGTGGCTGACTATATGGGTGGACGAGTTGGAGATCCTAAAAGCATGACAAGAGCATGGAGGAGTCTTAGTGACAGTCTGAAAGCAACACTTGGTAGCATGGTTTTGCCCCTTGGTTCTCTAACTATTGGATTGGCTCGGCATCGTGCGTTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTAAAAGGACTGCAATATACAGGTTCTGATGAAGTGGCAATAAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTGATGGCAGATCCTGGAACTCTTATTCCATCTGATGCAACTGATTCACATACCGAGTATGATGACTCTATTTTTGTGGCCAGTCCTTTATCAAGAGACCTTGATTCCTCTCGTGTAGCATCATCCAGCAGTGGGGTTGGAAGTTCATTTGAAGAAACTTCAGATTTTGGGATATTAGACAAAGGGAACAGATCAAAACATTATTCCTATGCAGGGAAAGAATCCGATGTAAGCAGGCCCACCACAGGAAAGGAAGAATCAATAAGACACTTGAATGAATTCAAAAGTCCCCACAATGTTGAGAAGATCATGGGGCAGGAAGCTCCTGGCAGAGCTAATCATCCACATTTGCATGCAAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACGTAGAATGAAAGTCAATGATGTTTCCCTATATATGATTGATGCTGCCAAGGAGAACCCTCACTTAGCTCAGAAACTTCATGATGTTTTTCTCGAAAGCGGTGTTGTTGCTCCTCCAAATTTATTTTCTGAAATTTATCATGAGGAGGTAGGTTCCCCAACTGAGGCCCACTTCCCAACTGAAGAAAAAGATGAACATAAACAGGGAAGTGGACGGCAAGAAACTGAGGTTGATGATAATCTTGGTCCTGCTCAATTTTTGCCTCCTTTGCCCCACTACAGAGTTCATCCCAAAGCAAGTTCTAGCAGTCAGCTGGAGCATTTTAAGCCTGTAGAAGGTTTAGGAATCAACCTTCCTCTTTATAGAAGGGAAGCAGCTGGACAGCATGTACCAACTCAGATTAAATATGGGCAAAATGTCCCGGTTGCTGCTGCAGCAGCGGCTGCTGCCGCCGTTGTCGCATCTTCTATGGTAGTTGCTGTGGCAAAGTCAAGCACTGACTCAAACATTGACCTTCCAGTAGCGGCAGCTGCTACTGCTGCAGCTGTAGTAGCCACCAGTGCTGCTGTCAGTAAACAATACGAGCAGGGAAGTCGAAGTGATGGAGATTCAGACAATGCTGGCTATGAGCCGAAGGGTAGTGATGATGGAGAGCATATTGCTTTAGGCGCAAATTCAGAAGGCGAGAGAATATCTGATAGATCAATAGTAAGTAATGATAGCACAAAATCTGATTCTGCATTAGATGATGTTGCCGAGTATGACATTCCGTGGGAGGAAATCACGCTGGGTGAGCGTATTGGACTTGGATCATATGGGGAAGTGTACCGAGGTGAATGGTGTGGAACTGAAGTTGCTGTAAAGAGGTTTCTTGATCAAGATATATCTGGTGAATCACTTGAAGAATTCAAAAGTGAGGTCAAAATAATGAAAAGATTGAGGCATCCAAATGTCGTTCTCTTCATGGGAGCTGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTAATTCACCGACCAAACAGTCAAATAGACGAGCGAAGACGTTTGAGGATGGCACTCGATACTGCTCGAGGAATGAACTATTTGCACAAGTGTACTCCAGTGATCGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTAAAGGTATGTGATTTTGGCTTATCGAGAATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACAGCCGAGTGGATGGCTCCAGAGGTGTTGAGGAATGAACCTTCAAATGAAAAGTGTGACGTTTATAGCTTTGGGGTCATATTATGGGAGCTCTCTACTTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAGGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTTGACATCCCAGACGATGTGGACCCTGCCATTGCTGATATTATCAGGAAATGCTGGCAGACAGATCCAAAGTTGAGACCTACATTTGCTGAAATATTGGCGGCTCTGAAGCCATTACAGAAGCCAATAATTGGTTCTCAAGTGCCTCGACCAAGTGCACCCGGTAAGCATGAGAAGGCTCAGTCATCACGTGTGGCAGAAGACTCAGCAAGATAG 2571 0.4422 MDGFYDLYGILTESTSARMPSLVDLQGTPISGSVTWEAVLVNRAADSNLLKLEQKALELTVKSRPDFEVVIDNDVVHKLAILVADYMGGRVGDPKSMTRAWRSLSDSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDEVAINFVKIDDGREYIVDLMADPGTLIPSDATDSHTEYDDSIFVASPLSRDLDSSRVASSSSGVGSSFEETSDFGILDKGNRSKHYSYAGKESDVSRPTTGKEESIRHLNEFKSPHNVEKIMGQEAPGRANHPHLHARSPSWTEGISSPAVRRMKVNDVSLYMIDAAKENPHLAQKLHDVFLESGVVAPPNLFSEIYHEEVGSPTEAHFPTEEKDEHKQGSGRQETEVDDNLGPAQFLPPLPHYRVHPKASSSSQLEHFKPVEGLGINLPLYRREAAGQHVPTQIKYGQNVPVAAAAAAAAAVVASSMVVAVAKSSTDSNIDLPVAAAATAAAVVATSAAVSKQYEQGSRSDGDSDNAGYEPKGSDDGEHIALGANSEGERISDRSIVSNDSTKSDSALDDVAEYDIPWEEITLGERIGLGSYGEVYRGEWCGTEVAVKRFLDQDISGESLEEFKSEVKIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNSQIDERRRLRMALDTARGMNYLHKCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAIADIIRKCWQTDPKLRPTFAEILAALKPLQKPIIGSQVPRPSAPGKHEKAQSSRVAEDSAR 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00060 856 MobiDBLite consensus disorder prediction 500 552 - -
Gabi4248g00060 856 PRINTS Tyrosine kinase catalytic domain signature 729 739 IPR001245 GO:0004672|GO:0006468
Gabi4248g00060 856 PRINTS Tyrosine kinase catalytic domain signature 792 814 IPR001245 GO:0004672|GO:0006468
Gabi4248g00060 856 PRINTS Tyrosine kinase catalytic domain signature 682 700 IPR001245 GO:0004672|GO:0006468
Gabi4248g00060 856 PRINTS Tyrosine kinase catalytic domain signature 643 656 IPR001245 GO:0004672|GO:0006468
Gabi4248g00060 856 PRINTS Tyrosine kinase catalytic domain signature 748 770 IPR001245 GO:0004672|GO:0006468
Gabi4248g00060 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Gabi4248g00060 856 ProSiteProfiles Protein kinase domain profile. 569 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4248g00060 856 MobiDBLite consensus disorder prediction 359 382 - -
Gabi4248g00060 856 SUPERFAMILY Protein kinase-like (PK-like) 552 820 IPR011009 -
Gabi4248g00060 856 FunFam Serine/threonine-protein kinase CTR1 648 831 - -
Gabi4248g00060 856 Gene3D Transferase(Phosphotransferase) domain 1 648 830 - -
Gabi4248g00060 856 MobiDBLite consensus disorder prediction 359 390 - -
Gabi4248g00060 856 SMART serkin_6 569 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4248g00060 856 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 311 826 - -
Gabi4248g00060 856 FunFam Serine/threonine-protein kinase isoform 1 560 647 - -
Gabi4248g00060 856 MobiDBLite consensus disorder prediction 829 856 - -
Gabi4248g00060 856 Pfam Protein tyrosine and serine/threonine kinase 569 820 IPR001245 GO:0004672|GO:0006468
Gabi4248g00060 856 CDD STKc_MAP3K-like 575 821 - -
Gabi4248g00060 856 Gene3D Phosphorylase Kinase; domain 1 562 646 - -
Gabi4248g00060 856 ProSitePatterns Protein kinases ATP-binding region signature. 575 596 IPR017441 GO:0005524
Gabi4248g00060 856 Pfam Ethylene-responsive protein kinase Le-CTR1 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00060 Gabi-Chr4248 758406 777477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00060 1 844 MAP Kinase Kinase Kinase AT1G73660 63.361 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi4248g00060 PK_Tyr_Ser-Thr 6.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00060 - - gmx:100816332 1410.97