LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4248g00059	ATGAAGAGCATTCTTAAGAAGCTTCATATCATGTCTAACCAATCAGAAAATGAACAAGGGTCTTCTCCATCAAAGGGAAACAACTCCAATCATGGTTCATCTTCATCCTCTAAGAAGCTTTTGAACTTTCGTTCCTCTCAAAGTTCTGAGCATAAACCCTTTTCGGGGCTCTCAGGTTGGTTGCATTCAGTTGCTAATAAGCAAAGTCCTAGTCCTCCATCTTTGAACCAAGCAAAAGGAGTGAGAATGGAGCCATCTGAAACGGTGAACAGTGGGGGTTTGGATGTTGTTTCAGATTCAGCTAGGCATGATTCAGAGTCTAGTGCTTCGAGGGATCCTGAAGTAGAGGAAGAGTATCAGATACAACTGGCTTTAAAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGGTCTTGTGACCCTGATAATTCACCAGCTGAAGTTGTGGCCTACCGTTATTGGAATTACAATTCTCTTGGTTATGACGACAAGATCATGGATGGTTTTTATGATCTGTATGGGATCTTGACTGAGTCAACCTCTGCAAGAATGCCTTCCCTCGTAGATCTACAAGGAACACCAATTTCAGGTAGTGTCACATGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGAGCAAAAAGCCCTAGAGCTGACTGTCAAATCAAGACCTGATTTTGAAGTAGTTATAGATAACGATGTGGTGCACAAGCTTGCAATACTTGTGGCTGACTATATGGGTGGACGAGTTGGAGATCCTAAAAGCATGACAAGAGCATGGAGGAGTCTTAGTGACAGTCTGAAAGCAACACTTGGTAGCATGGTTTTGCCCCTTGGTTCTCTAACTATTGGATTGGCTCGGCATCGTGCGTTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTAAAAGGACTGCAATATACAGGTTCTGATGAAGTGGCAATAAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTGATGGCAGATCCTGGAACTCTTATTCCATCTGATGCAACTGATTCACATACCGAGTATGATGACTCTATTTTTGTGGCCAGTCCTTTATCAAGAGACCTTGATTCCTCTCGTGTAGCATCATCCAGCAGTGGGGTTGGAAGTTCATTTGAAGAAACTTCAGATTTTGGGATATTAGACAAAGGGAACAGATCAAAACATTATTCCTATGCAGGGAAAGAATCCGATGTAAGCAGGCCCACCACAGGAAAGGAAGAATCAATAAGACACTTGAATGAATTCAAAAGTCCCCACAATGTTGAGAAGATCATGGGGCAGGAAGCTCCTGGCAGAGCTAATCATCCACATTTGCATGCAAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACGTAGAATGAAAGTCAATGATGTTTCCCTATATATGATTGATGCTGCCAAGGAGAACCCTCACTTAGCTCAGAAACTTCATGATGTTTTTCTCGAAAGCGGTGTTGTTGCTCCTCCAAATTTATTTTCTGAAATTTATCATGAGGAGGTAGGTTCCCCAACTGAGGCCCACTTCCCAACTGAAGAAAAAGATGAACATAAACAGGGAAGTGGACGGCAAGAAACTGAGGTTGATGATAATCTTGGTCCTGCTCAATTTTTGCCTCCTTTGCCCCACTACAGAGTTCATCCCAAAGCAAGTTCTAGCAGTCAGCTGGAGCATTTTAAGCCTGTAGAAGGTTTAGGAATCAACCTTCCTCTTTATAGAAGGGAAGCAGCTGGACAGCATGTACCAACTCAGATTAAATATGGGCAAAATGTCCCGGTTGCTGCTGCAGCAGCGGCTGCTGCCGCCGTTGTCGCATCTTCTATGGTAGTTGCTGTGGCAAAGTCAAGCACTGACTCAAACATTGACCTTCCAGTAGCGGCAGCTGCTACTGCTGCAGCTGTAGTAGCCACCAGTGCTGCTGTCAGTAAACAATACGAGCAGGGAAGTCGAAGTGATGGAGATTCAGACAATGCTGGCTATGAGCCGAAGGGTAGTGATGATGGAGAGCATATTGCTTTAGGCGCAAATTCAGAAGGCGAGAGAATATCTGATAGATCAATAGTAAGTAATGATAGCACAAAATCTGATTCTGCATTAGATGATGTTGCCGAGTATGACATTCCGTGGGAGGAAATCACGCTGGGTGAGCGTATTGGACTTGGATCATATGGGGAAGTGTACCGAGGTGAATGGTGTGGAACTGAAGTTGCTGTAAAGAGGTTTCTTGATCAAGATATATCTGGTGAATCACTTGAAGAATTCAAAAGTGAGGTCAAAATAATGAAAAGATTGAGGCATCCAAATGTCGTTCTCTTCATGGGAGCTGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTAATTCACCGACCAAACAGTCAAATAGACGAGCGAAGACGTTTGAGGATGGCACTCGATACTGCTCGAGGAATGAACTATTTGCACAAGTGTACTCCAGTGATCGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTAAAGGTATGTGATTTTGGCTTATCGAGAATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACACTGCAGGTACTTCTATTCTAG	2736	0.4342	MKSILKKLHIMSNQSENEQGSSPSKGNNSNHGSSSSSKKLLNFRSSQSSEHKPFSGLSGWLHSVANKQSPSPPSLNQAKGVRMEPSETVNSGGLDVVSDSARHDSESSASRDPEVEEEYQIQLALKLSAKEDPEAVQIEAVKQISLGSCDPDNSPAEVVAYRYWNYNSLGYDDKIMDGFYDLYGILTESTSARMPSLVDLQGTPISGSVTWEAVLVNRAADSNLLKLEQKALELTVKSRPDFEVVIDNDVVHKLAILVADYMGGRVGDPKSMTRAWRSLSDSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDEVAINFVKIDDGREYIVDLMADPGTLIPSDATDSHTEYDDSIFVASPLSRDLDSSRVASSSSGVGSSFEETSDFGILDKGNRSKHYSYAGKESDVSRPTTGKEESIRHLNEFKSPHNVEKIMGQEAPGRANHPHLHARSPSWTEGISSPAVRRMKVNDVSLYMIDAAKENPHLAQKLHDVFLESGVVAPPNLFSEIYHEEVGSPTEAHFPTEEKDEHKQGSGRQETEVDDNLGPAQFLPPLPHYRVHPKASSSSQLEHFKPVEGLGINLPLYRREAAGQHVPTQIKYGQNVPVAAAAAAAAAVVASSMVVAVAKSSTDSNIDLPVAAAATAAAVVATSAAVSKQYEQGSRSDGDSDNAGYEPKGSDDGEHIALGANSEGERISDRSIVSNDSTKSDSALDDVAEYDIPWEEITLGERIGLGSYGEVYRGEWCGTEVAVKRFLDQDISGESLEEFKSEVKIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNSQIDERRRLRMALDTARGMNYLHKCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTLQVLLF	911

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4248g00059	911	Pfam	Protein tyrosine and serine/threonine kinase	744	894	IPR001245	GO:0004672\|GO:0006468
	Gabi4248g00059	911	ProSiteProfiles	Protein kinase domain profile.	744	911	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4248g00059	911	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	863	875	IPR008271	GO:0004672\|GO:0006468
	Gabi4248g00059	911	Gene3D	Transferase(Phosphotransferase) domain 1	823	909	-	-
	Gabi4248g00059	911	MobiDBLite	consensus disorder prediction	534	557	-	-
	Gabi4248g00059	911	MobiDBLite	consensus disorder prediction	99	117	-	-
	Gabi4248g00059	911	MobiDBLite	consensus disorder prediction	61	84	-	-
	Gabi4248g00059	911	FunFam	Serine/threonine-protein kinase isoform 1	735	822	-	-
	Gabi4248g00059	911	MobiDBLite	consensus disorder prediction	534	565	-	-
	Gabi4248g00059	911	Gene3D	Phosphorylase Kinase; domain 1	737	821	-	-
	Gabi4248g00059	911	MobiDBLite	consensus disorder prediction	675	727	-	-
	Gabi4248g00059	911	SMART	serkin_6	744	911	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4248g00059	911	Pfam	Ethylene-responsive protein kinase Le-CTR1	156	359	-	-
	Gabi4248g00059	911	MobiDBLite	consensus disorder prediction	1	117	-	-
	Gabi4248g00059	911	ProSitePatterns	Protein kinases ATP-binding region signature.	750	771	IPR017441	GO:0005524
	Gabi4248g00059	911	SUPERFAMILY	Protein kinase-like (PK-like)	733	905	IPR011009	-
	Gabi4248g00059	911	CDD	STKc_MAP3K-like	750	907	-	-
	Gabi4248g00059	911	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	92	906	-	-
	Gabi4248g00059	911	MobiDBLite	consensus disorder prediction	8	54	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4248g00059	Gabi-Chr4248	757602	770107	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4248g00059	1	909	MAP Kinase Kinase Kinase	AT1G73660	59.433	0.0	969

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Gabi4248g00059		EDR1	5.1e-76	CL0125

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4248g00059	-		-	gmx:100816332	1399.42