Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00057 ATGAAGAGCATTCTTAAGAAGCTTCATATCATGTCTAACCAATCAGAAAATGAACAAGGGTCTTCTCCATCAAAGGGAAACAACTCCAATCATGGTTCATCTTCATCCTCTAAGAAGCTTTTGAACTTTCGTTCCTCTCAAAGTTCTGAGCATAAACCCTTTTCGGGGCTCTCAGGTTGGTTGCATTCAGTTGCTAATAAGCAAAGTCCTAGTCCTCCATCTTTGAACCAAGCAAAAGGAGTGAGAATGGAGCCATCTGAAACGGTGAACAGTGGGGGTTTGGATGTTGTTTCAGATTCAGCTAGGCATGATTCAGAGTCTAGTGCTTCGAGGGATCCTGAAGTAGAGGAAGAGTATCAGATACAACTGGCTTTAAAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGGTCTTGTGACCCTGATAATTCACCAGCTGAAGTTGTGGCCTACCGTTATTGGAATTACAATTCTCTTGGTTATGACGACAAGATCATGGATGGTTTTTATGATCTGTATGGGATCTTGACTGAGTCAACCTCTGCAAGAATGCCTTCCCTCGTAGATCTACAAGGAACACCAATTTCAGGTAGTGTCACATGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCTAATTTGTTGAAACTTGAGCAAAAAGCCCTAGAGCTGACTGTCAAATCAAGACCTGATTTTGAAGTAGTTATAGATAACGATGTGGTGCACAAGCTTGCAATACTTGTGGCTGACTATATGGGTGGACGAGTTGGAGATCCTAAAAGCATGACAAGAGCATGGAGGAGTCTTAGTGACAGTCTGAAAGCAACACTTGGTAGCATGGTTTTGCCCCTTGGTTCTCTAACTATTGGATTGGCTCGGCATCGTGCGTTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTAAAAGGACTGCAATATACAGGTTCTGATGAAGTGGCAATAAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGACCTGATGGCAGATCCTGGAACTCTTATTCCATCTGATGCAACTGATTCACATACCGAGTATGATGACTCTATTTTTGTGGCCAGTCCTTTATCAAGAGACCTTGATTCCTCTCGTGTAGCATCATCCAGCAGTGGGGTTGGAAGTTCATTTGAAGAAACTTCAGATTTTGGGATATTAGACAAAGGGAACAGATCAAAACATTATTCCTATGCAGGGAAAGAATCCGATGTAAGCAGGCCCACCACAGGAAAGGAAGAATCAATAAGACACTTGAATGAATTCAAAAGTCCCCACAATGTTGAGAAGATCATGGGGCAGGAAGCTCCTGGCAGAGCTAATCATCCACATTTGCATGCAAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACGTAGAATGAAAGTCAATGATGTTTCCCTATATATGATTGATGCTGCCAAGGAGAACCCTCACTTAGCTCAGAAACTTCATGATGTTTTTCTCGAAAGCGGTGTTGTTGCTCCTCCAAATTTATTTTCTGAAATTTATCATGAGGAGGTAGGTTCCCCAACTGAGGCCCACTTCCCAACTGAAGAAAAAGATGAACATAAACAGGGAAGTGGACGGCAAGAAACTGAGGTTGATGATAATCTTGGTCCTGCTCAATTTTTGCCTCCTTTGCCCCACTACAGAGTTCATCCCAAAGCAAGTTCTAGCAGTCAGCTGGAGCATTTTAAGCCTGTAGAAGGTTTAGGAATCAACCTTCCTCTTTATAGAAGGGAAGCAGCTGGACAGCATGTACCAACTCAGATTAAATATGGGCAAAATGTCCCGGTTGCTGCTGCAGCAGCGGCTGCTGCCGCCGTTGTCGCATCTTCTATGGTAGTTGCTGTGGCAAAGTCAAGCACTGACTCAAACATTGACCTTCCAGTAGCGGCAGCTGCTACTGCTGCAGCTGTAGTAGCCACCAGTGCTGCTGTCAGTAAACAATACGAGCAGGGAAGTCGAAGTGATGGAGATTCAGACAATGCTGGCTATGAGCCGAAGGGTAGTGATGATGGAGAGCATATTGCTTTAGGCGCAAATTCAGAAGGCGAGAGAATATCTGATAGATCAATAGTAAGTAATGATAGCACAAAATCTGATTCTGCATTAGATGATGTTGCCGAGTATGACATTCCGTGGGAGGAAATCACGCTGGGTGAGCGTATTGGACTTGGATCATATGGGGAAGTGTACCGAGGTGAATGGTGTGGAACTGAAGTTGCTGTAAAGAGGTTTCTTGATCAAGATATATCTGGTGAATCACTTGAAGAATTCAAAAGTGAGGTCAAAATAATGAAAAGATTGAGGCATCCAAATGTCGTTCTCTTCATGGGAGCTGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTAATTCACCGACCAAACAGTCAAATAGACGAGCGAAGACGTTTGAGGATGGCACTCGATACTGCTCGAGGAATGAACTATTTGCACAAGTGTACTCCAGTGATCGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTAAAGGTATGTGATTTTGGCTTATCGAGAATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACAGCCGAGTGGATGGCTCCAGAGGTGTTGAGGAATGAACCTTCAAATGAAAAGTGTGACGTTTATAGCTTTGGGGTCATATTATGGGAGCTCTCTACTTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAGGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGTCTTGACATCCCAGACGATGTGGACCCTGCCATTGCTGATATTATCAGGAAATGCTGGCAGACAGATCCAAAGTTGAGACCTACATTTGCTGAAATATTGGCGGCTCTGAAGCCATTACAGAAGCCAATAATTGGTTCTCAAGTGCCTCGACCAAGTGCACCCGGTAAGCATGAGAAGGCTCAGTCATCACGTGTGGCAGAAGACTCAGCAAGATAG 3096 0.4406 MKSILKKLHIMSNQSENEQGSSPSKGNNSNHGSSSSSKKLLNFRSSQSSEHKPFSGLSGWLHSVANKQSPSPPSLNQAKGVRMEPSETVNSGGLDVVSDSARHDSESSASRDPEVEEEYQIQLALKLSAKEDPEAVQIEAVKQISLGSCDPDNSPAEVVAYRYWNYNSLGYDDKIMDGFYDLYGILTESTSARMPSLVDLQGTPISGSVTWEAVLVNRAADSNLLKLEQKALELTVKSRPDFEVVIDNDVVHKLAILVADYMGGRVGDPKSMTRAWRSLSDSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDEVAINFVKIDDGREYIVDLMADPGTLIPSDATDSHTEYDDSIFVASPLSRDLDSSRVASSSSGVGSSFEETSDFGILDKGNRSKHYSYAGKESDVSRPTTGKEESIRHLNEFKSPHNVEKIMGQEAPGRANHPHLHARSPSWTEGISSPAVRRMKVNDVSLYMIDAAKENPHLAQKLHDVFLESGVVAPPNLFSEIYHEEVGSPTEAHFPTEEKDEHKQGSGRQETEVDDNLGPAQFLPPLPHYRVHPKASSSSQLEHFKPVEGLGINLPLYRREAAGQHVPTQIKYGQNVPVAAAAAAAAAVVASSMVVAVAKSSTDSNIDLPVAAAATAAAVVATSAAVSKQYEQGSRSDGDSDNAGYEPKGSDDGEHIALGANSEGERISDRSIVSNDSTKSDSALDDVAEYDIPWEEITLGERIGLGSYGEVYRGEWCGTEVAVKRFLDQDISGESLEEFKSEVKIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNSQIDERRRLRMALDTARGMNYLHKCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAIADIIRKCWQTDPKLRPTFAEILAALKPLQKPIIGSQVPRPSAPGKHEKAQSSRVAEDSAR 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00057 1031 FunFam Serine/threonine-protein kinase isoform 1 735 822 - -
Gabi4248g00057 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 863 875 IPR008271 GO:0004672|GO:0006468
Gabi4248g00057 1031 Gene3D Transferase(Phosphotransferase) domain 1 823 1005 - -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 534 557 - -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 99 117 - -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 61 84 - -
Gabi4248g00057 1031 CDD STKc_MAP3K-like 750 996 - -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 534 565 - -
Gabi4248g00057 1031 Gene3D Phosphorylase Kinase; domain 1 737 821 - -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 675 727 - -
Gabi4248g00057 1031 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 92 1001 - -
Gabi4248g00057 1031 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672|GO:0006468
Gabi4248g00057 1031 PRINTS Tyrosine kinase catalytic domain signature 904 914 IPR001245 GO:0004672|GO:0006468
Gabi4248g00057 1031 PRINTS Tyrosine kinase catalytic domain signature 967 989 IPR001245 GO:0004672|GO:0006468
Gabi4248g00057 1031 PRINTS Tyrosine kinase catalytic domain signature 818 831 IPR001245 GO:0004672|GO:0006468
Gabi4248g00057 1031 PRINTS Tyrosine kinase catalytic domain signature 857 875 IPR001245 GO:0004672|GO:0006468
Gabi4248g00057 1031 SMART serkin_6 744 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4248g00057 1031 SUPERFAMILY Protein kinase-like (PK-like) 727 995 IPR011009 -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 1 117 - -
Gabi4248g00057 1031 ProSitePatterns Protein kinases ATP-binding region signature. 750 771 IPR017441 GO:0005524
Gabi4248g00057 1031 Pfam Protein tyrosine and serine/threonine kinase 744 995 IPR001245 GO:0004672|GO:0006468
Gabi4248g00057 1031 Pfam Ethylene-responsive protein kinase Le-CTR1 156 359 - -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 8 54 - -
Gabi4248g00057 1031 FunFam Serine/threonine-protein kinase CTR1 823 1006 - -
Gabi4248g00057 1031 MobiDBLite consensus disorder prediction 1004 1031 - -
Gabi4248g00057 1031 ProSiteProfiles Protein kinase domain profile. 744 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00057 Gabi-Chr4248 757602 777477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00057 1 1019 MAP Kinase Kinase Kinase AT1G73660 61.822 0.0 1171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi4248g00057 PK_Tyr_Ser-Thr 8.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00057 - - gmx:100816332 1635.16