Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00055 ATGGACCCATCCTCGATCCCTCCAGCTCCGGCTCCGACCACCGTCCCTTTCGCCGCCGAACCGAACAACCACCCTCCAGCTCCCATTCCGGAGCCACAACTGAACCACCCACCTTACGCTGAGATGATATACACAGCAATCGAAGCACTGAAGGAGAAAGATGGGTCAAGCAAAAGAGCAATAGCGAAGTACATAGAGCAAGTTTACAAGGAAACGCTTCCACCGAATCACTCGAACTTGTTGACTCATCACTTGAAGCGTTTGAAGAACAACGGAATGCTCGTGATGGTCAAGAAATCTTACAAGCTTCCTAGATCTGCTCCTCTCCCAGCAGTAACAGCACCAGCCGCACCCTCATCTTCACAATCCCCAAGGCCCAGAGGTCGCCCCCGCAAGGCCCAAGCCCTACACCTTCAACCTCAGCCCATACAGAATGCTAATAATAACAACAACTCCCAGCAGCAAAATGCCGAGCCTGTCTGGGCCGCTCTTGGGCTTGCTGATGACCCGCAGGCTGCAGGAACAGCAGCAGCAGTGCCTGAGGAGAACAAGAGAGGCCCGGGTCGTCCTCGAAAGATGGAGGCGGGCCCGGGCCCTTCTGTTGCTGCTTCGATGACCCCGGCTCCTCGCCGGGGCAGAGGTCGTCCGCCTGGGTCTAAGACTAAGAAGAGGGTGGGCCGTCCCCCTAAAGAAAAGCCCGTCGCGGCTGTTTCTGATGGGCTCAAGAGGCGACCGGGTCGACCGCCGAAAAACCAGCCGCAACCAACTCCGATTCCCTTTGCTGCACCAGCTCCTGCTGCCGCCGTTGCAGCCGGACTTCCAGCACCGGCTGACGGTGGTGCTGCTGTGCCCGTCGTGGCGGAGGCTCCAAGGTCTAGAGGAAGGCCCAGGAAAAATACCAACCCTGCCATTGCTGTGGCTGCTGCTGCTGTTGCTGCCCCGGGCCGTGGTCGGGGTCGTGGTCGCGGTGGTGGACGAGGAAGAGGAAGAGGGCGTGGGGGATTGACTGCGCAGGCCAAGTTTCCTACCGGAAAGCCTGTGGGCCGCCCAAGGAAGGGAACAACTGCTGCTAGTACCTCGCAAAATGTTGCTAATGAAGATCTCACGAGGAAACTTGAACACTTTCAATCAAAGGTCAAGGAATCTCTTGCAGTGCTTAAGCCTCATTTTAACCATGAAAGTCCAGTCACAGCAATTGCAGCAATTCAAGAATTGGAAGTACTGGGAACTATGGACCTCAATGCACCGTTAAGGGATGAAACACTTCCACAGCAACAGCACCTGCAGCAAGAGCAGCAGCAGCAGCAGCAACAGCAACAGCTACTACCACAACAACAGCAGCTGCCACCACCACAACTGCAGCCACAGCCACAGATATTTCAACAACCGCAATATCCCCAGTTTCATTTGCAGCCGGTTGCACAGCAATATGTGTATCATCAGCAGCCGCCACCGCCGCAGCAGTAA 1467 0.5603 MDPSSIPPAPAPTTVPFAAEPNNHPPAPIPEPQLNHPPYAEMIYTAIEALKEKDGSSKRAIAKYIEQVYKETLPPNHSNLLTHHLKRLKNNGMLVMVKKSYKLPRSAPLPAVTAPAAPSSSQSPRPRGRPRKAQALHLQPQPIQNANNNNNSQQQNAEPVWAALGLADDPQAAGTAAAVPEENKRGPGRPRKMEAGPGPSVAASMTPAPRRGRGRPPGSKTKKRVGRPPKEKPVAAVSDGLKRRPGRPPKNQPQPTPIPFAAPAPAAAVAAGLPAPADGGAAVPVVAEAPRSRGRPRKNTNPAIAVAAAAVAAPGRGRGRGRGGGRGRGRGRGGLTAQAKFPTGKPVGRPRKGTTAASTSQNVANEDLTRKLEHFQSKVKESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNAPLRDETLPQQQHLQQEQQQQQQQQQLLPQQQQLPPPQLQPQPQIFQQPQYPQFHLQPVAQQYVYHQQPPPPQQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00055 488 PRINTS AT-hook-like domain signature 208 219 IPR017956 GO:0003677
Gabi4248g00055 488 PRINTS AT-hook-like domain signature 288 298 IPR017956 GO:0003677
Gabi4248g00055 488 PRINTS AT-hook-like domain signature 184 194 IPR017956 GO:0003677
Gabi4248g00055 488 Gene3D - 32 112 IPR036388 -
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 416 465 - -
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 138 159 - -
Gabi4248g00055 488 CDD H15 36 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4248g00055 488 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 35 105 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 419 447 - -
Gabi4248g00055 488 Pfam linker histone H1 and H5 family 36 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4248g00055 488 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Gabi4248g00055 488 SMART AT_hook_2 290 302 IPR017956 GO:0003677
Gabi4248g00055 488 SMART AT_hook_2 210 222 IPR017956 GO:0003677
Gabi4248g00055 488 SMART AT_hook_2 184 196 IPR017956 GO:0003677
Gabi4248g00055 488 SMART AT_hook_2 344 356 IPR017956 GO:0003677
Gabi4248g00055 488 SMART AT_hook_2 242 254 IPR017956 GO:0003677
Gabi4248g00055 488 SUPERFAMILY "Winged helix" DNA-binding domain 30 107 IPR036390 -
Gabi4248g00055 488 PRINTS Histone H5 signature 49 66 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi4248g00055 488 PRINTS Histone H5 signature 119 133 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi4248g00055 488 PRINTS Histone H5 signature 22 43 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 286 365 - -
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 1 36 - -
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 248 262 - -
Gabi4248g00055 488 PANTHER HISTONE H1 13 252 - -
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 108 263 - -
Gabi4248g00055 488 FunFam Histone H1.2 32 113 - -
Gabi4248g00055 488 MobiDBLite consensus disorder prediction 1 35 - -
Gabi4248g00055 488 SMART h15plus2 33 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00055 Gabi-Chr4248 741629 747142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00055 42 111 Single Myb Histone (SMH) Gene Family AT1G49950 42.857 3.50e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00055 - - gmx:100788215 333.569