Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00054 ATGTGGATGGTGGGTTACAACGAAGGTGGTGAGTTCAACATGGTTGATCATTCATTCAATGGAATGAAACTCAGGCCTCTGATGCCAAGGCCAATGACTTCTCCTAACAATGCTTCAACAACAACAACAACCACTCCTATCTTAAGCAGCATTCATGGCAACAATGATTTCTTTTCACAATATCATTATCACCATCTTGGAACAGTGACAGAGCAAAGCAAGAGAGAGCAACTCAATGCTCCACCAGTTGTTGTGAGCTCAAGGTGGAATCCTACCCCAGAGCAGCTAAGAGCCCTTGAAGAATTATATAGAAGAGGGACAAGAACACCATCTGCAGAACAAATCCAGCACATCACTGCACAGCTTAGAAAGTTTGGTAAAATTGAAGGGAAGAATGTTTTTTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAAAAGCGCCGCCGTCAAATGGAGTCAGGTGCTGATCAGGGTCACCACCACCACCACCATGATACTAATACTCAAGAGAAGAAAGATTTAGCTGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTAGTACTCTTGCAGAGGATTCTGTTTCAACACAAAGGGCATCAAAAGCAGCGGTTGCAGAGTGTAGAACAGATGGATGGGTACAATTCGATGAAGGAGAATTACAACAAAGAAGAAACTTTTTGGAAAGGAATGCCACATGGCACATGATGCAGTTTTCTTGTCCTCATACTCCTGCACCTGTCACCGACCTCATAAACACCCTTCCTAATGCCTCTGCAACTATTATGGCCACTACTACAACCACAGTAACAACAAGAACAATGGACCCAAAGCTCATTAACAACCATGATCTCAGCCTTTTTATTTCACCTCATAAAGAAAACAGCATTATCCACTACTTTAGCAATAACAGTAGTAAATGTGATGATAACTCTGTGGAATCTCAAACCCTTCAACTTTTCCCACTAAGGAGTGATGATGGAAGCAGTGATAACATCAACGATAAAGAGACAGACATATCAGCTTCAGCAATGAATGCCAACTTGACCCCAAACCAGTTTTTTGAGTTCCTTCCATTGAAGAACTAA 1119 0.4218 MWMVGYNEGGEFNMVDHSFNGMKLRPLMPRPMTSPNNASTTTTTTPILSSIHGNNDFFSQYHYHHLGTVTEQSKREQLNAPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKFGKIEGKNVFYWFQNHKARERQKRRRQMESGADQGHHHHHHDTNTQEKKDLAASRTVFEVEQTKNWAPSTNCSSTLAEDSVSTQRASKAAVAECRTDGWVQFDEGELQQRRNFLERNATWHMMQFSCPHTPAPVTDLINTLPNASATIMATTTTTVTTRTMDPKLINNHDLSLFISPHKENSIIHYFSNNSSKCDDNSVESQTLQLFPLRSDDGSSDNINDKETDISASAMNANLTPNQFFEFLPLKN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00054 372 Pfam Homeodomain 87 146 IPR001356 GO:0003677
Gabi4248g00054 372 Gene3D - 86 166 - -
Gabi4248g00054 372 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 71 367 IPR044555 GO:0003700|GO:0099402
Gabi4248g00054 372 MobiDBLite consensus disorder prediction 148 174 - -
Gabi4248g00054 372 FunFam WUSCHEL-related homeobox 4 86 153 - -
Gabi4248g00054 372 SMART HOX_1 84 151 IPR001356 GO:0003677
Gabi4248g00054 372 SUPERFAMILY Homeodomain-like 87 152 IPR009057 -
Gabi4248g00054 372 MobiDBLite consensus disorder prediction 140 174 - -
Gabi4248g00054 372 ProSiteProfiles 'Homeobox' domain profile. 92 147 IPR001356 GO:0003677
Gabi4248g00054 372 CDD homeodomain 88 148 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00054 Gabi-Chr4248 698943 701288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00054 1 372 Wox Gene Family AT3G18010 39.206 8.36e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi4248g00054 Homeodomain 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00054 - - gmx:100777274 500.36