Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00044 ATGGGAACACCAGCTGAGGGGGATCGGGCCTTAAGCCTTGGCTATAAAGGGGATATTGTTAACAGCTCGATCTCTGACAGATCAGATGATGGTGAATTATGTCCTGTTTCTCAATATCCTAATATGACCACCAATTTGTTGACTGCGAACAATGAAATGAAGCATTGTGGTTTTGTTGAGAGTTTTATATCTGATCCCTGCAAGTTAACTGAATTACCACCGAAAAGATCAAGCTTTCCTCCATCGGCTCAGGCTTTTATTGATGCCATCAAGAAGAATAGGTCTCTCCAGAGATCTCTTAGACGTAAGTTGACTGAGACTGAAGCTAAAATTGAGAAAAACAAAGAGCTAAGGGACAAAGTTAAGATCCTTAAGGACTTCCAGCTTTCATGCATTAGAAGGACAGGGAGTGCTTTATCACTAAAAAAGGATTTCCGTATTCAGTTAATATCAGCAAAAAAGTCTTATGCTCCAAATGAAAAGAACCATAAAAAAATATCTGCAATGTGTTATGGCCCAGATGAGAATCCTCTTGTCCCTTCTTATAAGATGGTTTTGGAAAGATTTGCGCTTTCATTGGATCGGAAAAAATGGTCATCTGTGGAAAGGGAAAATCTTAGGAAGGGAATTAAGGAACAATTCCAAAAAATGGTGTATCAAATTTCAGTAGACAGATTAAGTTCAGAGTGTTCATTTGGAGGTGCAAATGACTTGGATAGCATAACTGAATCTGTTAAAGCTCTTGAAATTTCATCAGAGTGGGTTAGAGAATTTTTACCTAAAGTTGATTGGGATCAGTTGGCTTCCACACATCTTTCTGGTCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGATCCCTTGATCAAACAAGACCCATGGACTAGGGAAGAGGATATGTCTCTTTTGCGTATTGTTCAAGATAAGGGCATTGGGAACTGGATTGATATTGCTGAATCATTGGCGGCCACAAACAGGACTCCGGATAATAATACAAACAGGACTCCATTTCAATGCTTGGCACGATATCAAAGGAGCTTAAATTCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTTTGTTCTGCTGTAGCATATTTTGGTGAGCAAGATTGGCAGTCTGTGGCTTCTGTTTTAGAAAGGCGGACTGGAACACAGTGCTCAAATAGATGGAAAAAATCGCTTTATCCTAAGAGGAAAGGGAGCTTTACTCCAGAGGAGGATGAACGCTTAATAGTAGCAGTCATGCTTTTTGGACGGAAATGGATTCAAGTAGCTAAATTTGTTCCTGGAAGGACCCAATCTCAGTGTAGGGACAGATACCTCAATAGTTTGGACCCTTCTTTGAAATGGGGTGGATGGACTAAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGTCAAGCATAGATTCTGCTGGTCTAAGGTTGCTGAAGATGTGCCTCCTCGCACTGATTCTCAATGCCGGAAGAGATGGAGGGTGTTATTTCCTGATCAAGTTCCTTTGCTTCAAGAGGCAAGAAAGACTCTAAAGTCTTATCTTGCTAGTAACTTTGTTGATCGAGAATCTGAACGCCCGCCCCTTACACTGAATGACTTTCTTCCTTTACGTATGTTAGTTTCACCATCTGATGATGGTGCTGTGAATCTCCCCAGTAAGCGGAAGAGGGAGTCAAGCAGAATAAGGTCTAAAAAACATGTAAATGAAGCTCGACCCTGTCCCAAGGAAGTACAAGATGTAGTATGTAGTGACCAGGTCAATACTTGTGGTGTAGATGTCTCATTCATTACGAGCAGTAATGTTCCCAAGAAAATGAGGTCCAAAAGACATGCGAAAAAGGCTCGAAATTGTCTCAAGGAAGTAGAGGATACAGTAAATGGTTACGAAGTCGAGACATGTATTGAGAGTTCAGAAATTCAAGATTGGGACAACAAAACTCTTGCATGCTTTTTACGCAACAAATCAAAGAAGAGACGATTTAAATGTACCAAAAATGTGAGTCCGGCTTTCTCTCCCTCTGGGACAACAATTGTATCTAAGCAGATTGAAAATCAAATCCCATCTGGTGAGGAAGATGGGTTGTCTCAGTCATGTGGTACTGATGGAACTAAAGATTTGTCCATGCGGCAGATTGTTGTTTATCACAGACAAGTGACAAAACCAGAAGATGCAAATAGATCGACTGGGGATGATGACGATGATATGACTCTTGCTTGCCTTATGGGTAACAAATCAAAAAAATTGAAAAAAGGATCTTTGTTACTTCGTGAAGTGCATTGTGGAAACAATCCAACCATCATAGTTGATGGCGATAGACCGTCAATGTCAAAGCTTGTTGAAGAGGAGACTGTTTTGCATGGTGTGGCTGAACCCACAAACGTAAATGTGGAAGAAAAAGATTATGACCTGCTTGCTTCTTTCCTGCAAAATAAGACAAAGAGACAGCGAAGAAGAGCCAATGTTCATAAAAGTAAGTGTTAA 2502 0.4045 MGTPAEGDRALSLGYKGDIVNSSISDRSDDGELCPVSQYPNMTTNLLTANNEMKHCGFVESFISDPCKLTELPPKRSSFPPSAQAFIDAIKKNRSLQRSLRRKLTETEAKIEKNKELRDKVKILKDFQLSCIRRTGSALSLKKDFRIQLISAKKSYAPNEKNHKKISAMCYGPDENPLVPSYKMVLERFALSLDRKKWSSVERENLRKGIKEQFQKMVYQISVDRLSSECSFGGANDLDSITESVKALEISSEWVREFLPKVDWDQLASTHLSGRTGAECESRWLNCEDPLIKQDPWTREEDMSLLRIVQDKGIGNWIDIAESLAATNRTPDNNTNRTPFQCLARYQRSLNSSMLNSEWTEEEDAQLCSAVAYFGEQDWQSVASVLERRTGTQCSNRWKKSLYPKRKGSFTPEEDERLIVAVMLFGRKWIQVAKFVPGRTQSQCRDRYLNSLDPSLKWGGWTKEEDLRLEAAIVKHRFCWSKVAEDVPPRTDSQCRKRWRVLFPDQVPLLQEARKTLKSYLASNFVDRESERPPLTLNDFLPLRMLVSPSDDGAVNLPSKRKRESSRIRSKKHVNEARPCPKEVQDVVCSDQVNTCGVDVSFITSSNVPKKMRSKRHAKKARNCLKEVEDTVNGYEVETCIESSEIQDWDNKTLACFLRNKSKKRRFKCTKNVSPAFSPSGTTIVSKQIENQIPSGEEDGLSQSCGTDGTKDLSMRQIVVYHRQVTKPEDANRSTGDDDDDMTLACLMGNKSKKLKKGSLLLREVHCGNNPTIIVDGDRPSMSKLVEEETVLHGVAEPTNVNVEEKDYDLLASFLQNKTKRQRRRANVHKSKC 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00044 833 SMART sant 406 454 IPR001005 -
Gabi4248g00044 833 SMART sant 355 404 IPR001005 -
Gabi4248g00044 833 SMART sant 194 290 IPR001005 -
Gabi4248g00044 833 SMART sant 293 352 IPR001005 -
Gabi4248g00044 833 SMART sant 457 505 IPR001005 -
Gabi4248g00044 833 Pfam Myb-like DNA-binding domain 297 367 - -
Gabi4248g00044 833 Gene3D - 406 458 - -
Gabi4248g00044 833 Gene3D - 190 294 - -
Gabi4248g00044 833 Gene3D - 459 502 - -
Gabi4248g00044 833 MobiDBLite consensus disorder prediction 552 576 - -
Gabi4248g00044 833 SUPERFAMILY Homeodomain-like 355 448 IPR009057 -
Gabi4248g00044 833 CDD SANT 409 452 IPR001005 -
Gabi4248g00044 833 CDD SANT 358 402 IPR001005 -
Gabi4248g00044 833 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 359 406 IPR017930 -
Gabi4248g00044 833 ProSiteProfiles Myb-like domain profile. 406 452 IPR001005 -
Gabi4248g00044 833 CDD SANT 461 503 IPR001005 -
Gabi4248g00044 833 ProSiteProfiles Myb-like domain profile. 453 503 IPR001005 -
Gabi4248g00044 833 ProSiteProfiles SANT domain profile. 405 450 IPR017884 -
Gabi4248g00044 833 Coils Coil 97 117 - -
Gabi4248g00044 833 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 453 507 IPR017930 -
Gabi4248g00044 833 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 289 354 IPR017930 -
Gabi4248g00044 833 Coils Coil 618 638 - -
Gabi4248g00044 833 MobiDBLite consensus disorder prediction 556 576 - -
Gabi4248g00044 833 Pfam Myb-like DNA-binding domain 407 450 IPR001005 -
Gabi4248g00044 833 Pfam Myb-like DNA-binding domain 460 502 IPR001005 -
Gabi4248g00044 833 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 28 647 - -
Gabi4248g00044 833 ProSiteProfiles Myb-like domain profile. 289 350 IPR001005 -
Gabi4248g00044 833 Gene3D - 357 405 - -
Gabi4248g00044 833 Gene3D - 295 354 - -
Gabi4248g00044 833 ProSiteProfiles Myb-like domain profile. 351 402 IPR001005 -
Gabi4248g00044 833 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 407 452 IPR017930 -
Gabi4248g00044 833 SUPERFAMILY Homeodomain-like 269 333 IPR009057 -
Gabi4248g00044 833 SUPERFAMILY Homeodomain-like 432 505 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00044 Gabi-Chr4248 537975 544584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00044 72 543 MYB-Related Transcription Factor Family AT3G18100 51.653 2.51e-165 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4248g00044 Myb_DNA-bind_6 5.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00044 K09422 - gmx:100818474 939.873