Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00040 ATGGCTCCTCGCGCCGATGAATATGAACAAGAGAGCCTCTCCGCCACCGACGAAGAAGAAGAAGACGACGATGAAGGTTTTAAGGAGGACATGGCTGCGCTCGCCAGAGCCTGCACCATTGCCGGTACCCGCTGCGACAACGATTTCACCGCCTGCCGTGATCTCACCATTCACTCCGACCAAATTCAGGCCGAGGACCCGCTCTTGGCCGCCGGAGATGCCATTGTCCCCGTAACCGATGACTTCGGCTTCGACTCTGACTCGGACGCTGACGATATAAAGTGCCTTGAAAGAGTGCAGAGCCTCTACCAGCCTTTGTGTTCTCTTCCCCCTAAGACCACAGCTTACATCGACTACGATGATGATGACGACGGCGAGGACGATTTTGCGACAGTCCGTGCTATTTTTAATCGGTTTTCCAACTACAACGAAGGCGGAATGGGAACACCAGCTGAGGGGGATCGGGCCTTAAGCCTTGGCTATAAAGGGGATATTGTTAACAGCTCGATCTCTGACAGATCAGATGATGGTGAATTATGTCCTGTTTCTCAATATCCTAATATGACCACCAATTTGTTGACTGCGAACAATGAAATGAAGCATTGTGGTTTTGTTGAGAGTTTTATATCTGATCCCTGCAAGTTAACTGAATTACCACCGAAAAGATCAAGCTTTCCTCCATCGGCTCAGGCTTTTATTGATGCCATCAAGAAGAATAGGTCTCTCCAGAGATCTCTTAGACGTAAGTTGACTGAGACTGAAGCTAAAATTGAGAAAAACAAAGAGCTAAGGGACAAAGTTAAGATCCTTAAGGACTTCCAGCTTTCATGCATTAGAAGGACAGGGAGTGCTTTATCACTAAAAAAGGATTTCCGTATTCAGTTAATATCAGCAAAAAAGTCTTATGCTCCAAATGAAAAGGTTGGTCACTTGAACCATAAAAAAATATCTGCAATGTGTTATGGCCCAGATGAGAATCCTCTTGTCCCTTCTTATAAGATGGTTTTGGAAAGATTTGCGCTTTCATTGGATCGGAAAAAATGGTCATCTGTGGAAAGGGAAAATCTTAGGAAGGGAATTAAGGAACAATTCCAAAAAATGGTGTATCAAATTTCAGTAGACAGATTAAGTTCAGAGTGTTCATTTGGAGGTGCAAATGACTTGGATAGCATAACTGAATCTGTTAAAGCTCTTGAAATTTCATCAGAGTGGGTTAGAGAATTTTTACCTAAAGTTGATTGGGATCAGTTGGCTTCCACACATCTTTCTGGTCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGATCCCTTGATCAAACAAGACCCATGGACTAGGGAAGAGGATATGTCTCTTTTGCGTATTGTTCAAGATAAGGGCATTGGGAACTGGATTGATATTGCTGAATCATTGGCGGCCACAAACAGGACTCCGGATAATAATACAAACAGGACTCCATTTCAATGCTTGGCACGATATCAAAGGAGCTTAAATTCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTTTGTTCTGCTGTAGCATATTTTGGTGAGCAAGATTGGCAGTCTGTGGCTTCTGTTTTAGAAAGGCGGACTGGAACACAGTGCTCAAATAGATGGAAAAAATCGCTTTATCCTAAGAGGAAAGGGAGCTTTACTCCAGAGGAGGATGAACGCTTAATAGTAGCAGTCATGCTTTTTGGACGGAAATGGATTCAAGTAGCTAAATTTGTTCCTGGAAGGACCCAATCTCAGTGTAGGGACAGATACCTCAATAGTTTGGACCCTTCTTTGAAATGGGGTGGATGGACTAAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGTCAAGCATAGATTCTGCTGGTCTAAGGTTGCTGAAGATGTGCCTCCTCGCACTGATTCTCAATGCCGGAAGAGATGGAGGGTGTTATTTCCTGATCAAGTTCCTTTGCTTCAAGAGGCAAGAAAGACTCTAAAGTCTTATCTTGCTAGTAACTTTGTTGATCGAGAATCTGAACGCCCGCCCCTTACACTGAATGACTTTCTTCCTTTACGTATGTTAGTTTCACCATCTGATGATGGTGCTGTGAATCTCCCCAGTAAGCGGAAGAGGGAGTCAAGCAGAATAAGGTCTAAAAAACATGTAAATGAAGCTCGACCCTGTCCCAAGGAAGTACAAGATGTAGTATGTAGTGACCAGGTCAATACTTGTGGTGTAGATGTCTCATTCATTACGAGCAGTAATGTTCCCAAGAAAATGAGGTCCAAAAGACATGCGAAAAAGGCTCGAAATTGTCTCAAGGAAGTAGAGGATACAGTAAATGGTTACGAAGTCGAGACATGTATTGAGAGTTCAGAAATTCAAGATTGGGACAACAAAACTCTTGCATGCTTTTTACGCAACAAATCAAAGAAGAGACGATTTAAATGTACCAAAAATGTGAGTCCGGCTTTCTCTCCCTCTGGGACAACAATTGTATCTAAGCAGATTGAAAATCAAATCCCATCTGGTGAGGAAGATGGGTTGTCTCAGTCATGTGGTACTGATGGAACTAAAGATTTGTCCATGCGGCAGATTGTTGTTTATCACAGACAAGTGACAAAACCAGAAGATGCAAATAGATCGACTGGGGATGATGACGATGATATGACTCTTGCTTGCCTTATGGGTAACAAATCAAAAAAATTGAAAAAAGGATCTTTGTTACTTCGTGAAGTGCATTGTGGAAACAATCCAACCATCATAGTTGATGGCGATAGACCGTCAATGTCAAAGCTTGTTGAAGAGGAGACTGTTTTGCATGGTGTGGCTGAACCCACAAACGTAAATGTGGAAGAAAAAGATTATGACCTGCTTGCTTCTTTCCTGCAAAATAAGACAAAGAGACAGCGAAGAAGAGCCAATGTTCATAAAAGTAAGTGTTAA 2952 0.4258 MAPRADEYEQESLSATDEEEEDDDEGFKEDMAALARACTIAGTRCDNDFTACRDLTIHSDQIQAEDPLLAAGDAIVPVTDDFGFDSDSDADDIKCLERVQSLYQPLCSLPPKTTAYIDYDDDDDGEDDFATVRAIFNRFSNYNEGGMGTPAEGDRALSLGYKGDIVNSSISDRSDDGELCPVSQYPNMTTNLLTANNEMKHCGFVESFISDPCKLTELPPKRSSFPPSAQAFIDAIKKNRSLQRSLRRKLTETEAKIEKNKELRDKVKILKDFQLSCIRRTGSALSLKKDFRIQLISAKKSYAPNEKVGHLNHKKISAMCYGPDENPLVPSYKMVLERFALSLDRKKWSSVERENLRKGIKEQFQKMVYQISVDRLSSECSFGGANDLDSITESVKALEISSEWVREFLPKVDWDQLASTHLSGRTGAECESRWLNCEDPLIKQDPWTREEDMSLLRIVQDKGIGNWIDIAESLAATNRTPDNNTNRTPFQCLARYQRSLNSSMLNSEWTEEEDAQLCSAVAYFGEQDWQSVASVLERRTGTQCSNRWKKSLYPKRKGSFTPEEDERLIVAVMLFGRKWIQVAKFVPGRTQSQCRDRYLNSLDPSLKWGGWTKEEDLRLEAAIVKHRFCWSKVAEDVPPRTDSQCRKRWRVLFPDQVPLLQEARKTLKSYLASNFVDRESERPPLTLNDFLPLRMLVSPSDDGAVNLPSKRKRESSRIRSKKHVNEARPCPKEVQDVVCSDQVNTCGVDVSFITSSNVPKKMRSKRHAKKARNCLKEVEDTVNGYEVETCIESSEIQDWDNKTLACFLRNKSKKRRFKCTKNVSPAFSPSGTTIVSKQIENQIPSGEEDGLSQSCGTDGTKDLSMRQIVVYHRQVTKPEDANRSTGDDDDDMTLACLMGNKSKKLKKGSLLLREVHCGNNPTIIVDGDRPSMSKLVEEETVLHGVAEPTNVNVEEKDYDLLASFLQNKTKRQRRRANVHKSKC 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00040 983 Pfam Myb-like DNA-binding domain 447 517 - -
Gabi4248g00040 983 Gene3D - 507 555 - -
Gabi4248g00040 983 Gene3D - 445 504 - -
Gabi4248g00040 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 439 504 IPR017930 -
Gabi4248g00040 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 603 657 IPR017930 -
Gabi4248g00040 983 CDD SANT 611 653 IPR001005 -
Gabi4248g00040 983 ProSiteProfiles Myb-like domain profile. 556 602 IPR001005 -
Gabi4248g00040 983 Gene3D - 341 444 - -
Gabi4248g00040 983 Gene3D - 556 608 - -
Gabi4248g00040 983 ProSiteProfiles SANT domain profile. 555 600 IPR017884 -
Gabi4248g00040 983 CDD SANT 559 602 IPR001005 -
Gabi4248g00040 983 CDD SANT 508 552 IPR001005 -
Gabi4248g00040 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 509 556 IPR017930 -
Gabi4248g00040 983 SMART sant 607 655 IPR001005 -
Gabi4248g00040 983 SMART sant 344 440 IPR001005 -
Gabi4248g00040 983 SMART sant 505 554 IPR001005 -
Gabi4248g00040 983 SMART sant 443 502 IPR001005 -
Gabi4248g00040 983 SMART sant 556 604 IPR001005 -
Gabi4248g00040 983 ProSiteProfiles Myb-like domain profile. 603 653 IPR001005 -
Gabi4248g00040 983 MobiDBLite consensus disorder prediction 702 726 - -
Gabi4248g00040 983 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4248g00040 983 ProSiteProfiles Myb-like domain profile. 501 552 IPR001005 -
Gabi4248g00040 983 SUPERFAMILY Homeodomain-like 582 655 IPR009057 -
Gabi4248g00040 983 Coils Coil 768 788 - -
Gabi4248g00040 983 Coils Coil 243 263 - -
Gabi4248g00040 983 MobiDBLite consensus disorder prediction 12 27 - -
Gabi4248g00040 983 SUPERFAMILY Homeodomain-like 505 598 IPR009057 -
Gabi4248g00040 983 MobiDBLite consensus disorder prediction 706 726 - -
Gabi4248g00040 983 ProSiteProfiles Myb-like domain profile. 439 500 IPR001005 -
Gabi4248g00040 983 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 796 - -
Gabi4248g00040 983 Pfam Myb-like DNA-binding domain 610 652 IPR001005 -
Gabi4248g00040 983 Pfam Myb-like DNA-binding domain 557 600 IPR001005 -
Gabi4248g00040 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 557 602 IPR017930 -
Gabi4248g00040 983 Gene3D - 609 652 - -
Gabi4248g00040 983 SUPERFAMILY Homeodomain-like 419 482 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00040 Gabi-Chr4248 537975 545043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00040 218 693 MYB-Related Transcription Factor Family AT3G18100 51.860 9.89e-164 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4248g00040 Myb_DNA-bind_6 6.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00040 K09422 - gmx:778073 1060.44