Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00036 ATGGCAGACCTCGATCTGTCCAAGAAAGTAGCTGATAGGTATCTTAAGCGTGAAGTCCTTGGTGAAGGTACCTATGGTGTCGTATACAAAGCCATTGACACCCAGACTGGACATACGGTTGCAATTAAGAAGATTCGGCTAGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTGCTTAAAGAGCTGAAAGATCCAAACATTATTGAGTTGATTGATGCGTTCCCCCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATACGAGACCGAAATATTTTCCTTTCACCTGGGGATATAAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGGAGCCCAGATCGCAGGTTTACTCATCAGGTGTTTGCTCGATGGTATAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGCCCCTTTCTGCAGGGTTCAAGTGACATTGATCAATTAGGAAAGATTTTCGCAGCATTTGGAACTCCATCACCTTCTCAGTGGCCTGATATGGTGTATCTTCCCGATTATGTTGAATACCAATATGTTCCTGCTCCGCCTTTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCATTAGAGCACAGGTACTTTTATTCTGCACCTCTGCCCACAGATCCAGATAAGCTTCCAAGACCTCCCCCTAAGAGGGAACCTAAGGTTTCAGATTTCAATTCACATGACGGTCCTACTGTCTTATCACCTCCAAGAAAGTCAAGGAGAGTGATGCCAGGGCGTGATGGGTTTGAAGGAAATTCTTTGCAGGGAGATAAGACTGAGCCAGCACCAATGTCGTTAGATTTTTCTGTCTTTGGATTAAAGCCTCCAAATAGACCTACAATTAGCAGTGCTGACAGATCACATTTGAAAAGAAAATTAGATCTAGAATTCCAGCAGCCAGAATGA 1194 0.4229 MADLDLSKKVADRYLKREVLGEGTYGVVYKAIDTQTGHTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISVQQALEHRYFYSAPLPTDPDKLPRPPPKREPKVSDFNSHDGPTVLSPPRKSRRVMPGRDGFEGNSLQGDKTEPAPMSLDFSVFGLKPPNRPTISSADRSHLKRKLDLEFQQPE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00036 397 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Gabi4248g00036 397 CDD STKc_CDK7 13 306 IPR037770 GO:0005675|GO:0008353|GO:0070985
Gabi4248g00036 397 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4248g00036 397 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Gabi4248g00036 397 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Gabi4248g00036 397 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Gabi4248g00036 397 MobiDBLite consensus disorder prediction 306 320 - -
Gabi4248g00036 397 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Gabi4248g00036 397 MobiDBLite consensus disorder prediction 380 397 - -
Gabi4248g00036 397 FunFam Cyclin-dependent kinase D-1 5 94 - -
Gabi4248g00036 397 MobiDBLite consensus disorder prediction 299 397 - -
Gabi4248g00036 397 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Gabi4248g00036 397 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4248g00036 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gabi4248g00036 397 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00036 Gabi-Chr4248 461289 465711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00036 8 394 Core Cell Cycle Gene Families AT1G18040 79.070 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Gabi4248g00036 Pkinase 7.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00036 K02202 - jre:109003593 712.99